SVMCrossVal.git

classify.m           1) function classify(varargin)

classify.m           2) 

private/classify.m   3) global CROSSVAL_METHOD_DEF;

private/classify.m   4) 

classify.m           5) switch nargin
classify.m           6)     case 1
classify.m           7)         paramModel = varargin{1};

classify.m           8)         %PROJECT_BASE_PATH = 'D:\Analyze\Stimolos';
classify.m           9)         PROJECT_BASE_PATH = 'D:\Analyze\Choice\24pilot';

classify.m          10)         PROJECT_RESULT_PATH = 'results\SPM.mat';

classify.m          11)     otherwise
classify.m          12)         error('spmtoolbox:SVMCrossVal:arginError','Please Specify action and parameter model');

classify.m          13) end

private/classify.m  14) 
private/classify.m  15)         % timeline params (claculate and plot)
private/classify.m  16)         timelineParams = struct;
private/classify.m  17)         
private/classify.m  18)         timelineParams.frameShiftStart = getDouble(paramModel.txtFrameShiftStart);  % -20;
private/classify.m  19)         timelineParams.frameShiftEnd   = getDouble(paramModel.txtFrameShiftEnd); %15;
private/classify.m  20)         timelineParams.decodeDuration  = getDouble(paramModel.txtFrameShiftDur);
private/classify.m  21)         timelineParams.psthStart       = getDouble(paramModel.txtPSTHStart); % -25;
private/classify.m  22)         timelineParams.psthEnd         = getDouble(paramModel.txtPSTHEnd); % 20;
private/classify.m  23)         timelineParams.baselineStart   = getDouble(paramModel.txtBaselineStart); % -22;
private/classify.m  24)         timelineParams.baselineEnd     = getDouble(paramModel.txtBaselineEnd); % -20;       

private/classify.m  25)        

classify.m          26)         % common params

classify.m          27)         calculateParams  = struct;

private/classify.m  28)         

private/classify.m  29) %         calculateParams.CROSSVAL_METHOD_DEF = CROSSVAL_METHOD_DEF;

private/classify.m  30)         calculateParams.CROSSVAL_METHOD     = CROSSVAL_METHOD_DEF.svmcrossval;

private/classify.m  31)         calculateParams.PROJECT_BASE_PATH   = PROJECT_BASE_PATH;
private/classify.m  32)         calculateParams.PROJECT_RESULT_PATH = PROJECT_RESULT_PATH;

private/classify.m  33)         
private/classify.m  34)         calculateParams.RANDOMIZE       = 0;
private/classify.m  35)         

private/classify.m  36)         calculateParams.smoothed        = getChkValue(paramModel.chkSmoothed);

classify.m          37) 

classify.m          38)         calculateParams.svmargs         = get(paramModel.txtSVMopts,'String');

classify.m          39)         calculateParams.sessionList     = 1:3;

classify.m          40) 

classify.m          41)         classStruct = parseClassDef(paramModel);
classify.m          42)         
classify.m          43)         

classify.m          44)         calculateParams.labelMap        = LabelMap(classStruct.labelCells , classStruct.conditionCells, 'auto'); % LabelMap({'<','>','<+<','>+>','<+>','>+<'},{-2,-1,1,2,3,4}); 0 is autolabel
classify.m          45)         calculateParams.classList       = getClasses(calculateParams.labelMap);
classify.m          46)         calculateParams.eventList       = classStruct.eventMatrix; %[9,11,13; 10,12,14];
classify.m          47) %         calculateParams.eventList       = getPSTEventMatrix(calculateParams.labelMap);
classify.m          48)         

classify.m          49)         subjectSelection = getSubjectIDString(paramModel);

private/classify.m  50)         calculateParams.subjectSelection = subjectSelection;

classify.m          51)         

private/classify.m  52)         decode = claculateMultiSubjectDecodePerformance(timelineParams,calculateParams);

classify.m          53) 
classify.m          54)         display('Finished calculations.');

classify.m          55)         display('Plotting...');

classify.m          56) 

classify.m          57)         plotParams                   = struct;

private/classify.m  58)         

private/classify.m  59) %         plotParams.CROSSVAL_METHOD_DEF = CROSSVAL_METHOD_DEF;

private/classify.m  60)         plotParams.CROSSVAL_METHOD     = calculateParams.CROSSVAL_METHOD;
private/classify.m  61)         

classify.m          62)         plotParams.nClasses          = length(calculateParams.classList);

private/classify.m  63) 

classify.m          64)         plotParams.decodePerformance = decode.decodePerformance;
classify.m          65)         plotParams.rawTimeCourse     = decode.rawTimeCourse;

private/classify.m  66)         plotParams.SubjectID         = subjectSelection;

classify.m          67)         plotParams.smoothed          = boolToYesNoString(calculateParams.smoothed);
classify.m          68) 

classify.m          69)         assignin('base','plotParams',plotParams);
classify.m          70) %         plotDecodePerformance(params.psthStart,params.psthEnd,params.nClasses,decode.decodeTable,params.frameShiftStart,params.frameShiftEnd,decode.rawTimeCourse);

private/classify.m  71)         plotDecodePerformance(timelineParams,plotParams);

classify.m          72)             

classify.m          73)         display('all done.');