private/calculateRoiImageData.m (9b240b5) - SVMCrossVal.git

calculateRoiImageData.m

function [extr xx yy zz] = calculateRoiImageData(filenameList,roiImageList)

V = filenameList;
nImage = numel(V);
Vm = roiImageList;
nRoi = numel(Vm);

for kImage=1:nImage
    x = []; y = []; z = [];
    dat = [];
    for iRoiFile = 1:nRoi
        [x1 y1] = ndgrid(1:V(kImage).dim(1),1:V(kImage).dim(2));
        for p = 1:V(kImage).dim(3) % resample mask Vm(i) in space of V(k)
            B = spm_matrix([0 0 -p 0 0 0 1 1 1]);
            M = inv(B*inv(V(kImage).mat)*Vm(iRoiFile).mat);
            msk = find(spm_slice_vol(Vm(iRoiFile),M,V(kImage).dim(1:2),0));
            if ~isempty(msk)
                z1 = p*ones(size(msk(:)));
                x = [x; x1(msk(:))];
                y = [y; y1(msk(:))];
                z = [z; z1];
            end
        end
        dat = [dat spm_sample_vol(V(kImage), x, y, z,0)];

if kImage == 1 % sample coordinates from first image
            xx = x;
            yy = y;
            zz = z;
        end

end
    extr(kImage).dat = dat;
end

end

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