private/runCoordTable.m (e004973) - SVMCrossVal.git

runCoordTable.m

function runCoordTable(args)
    disp('run coord table')
    
    subjects = args.subjects;
    nSubjects = size(subjects);
    sessionlist = args.sessionList;

for s = 1:nSubjects
        subjectStruct{s}.dir = fullfile(args.basedir,cell2mat(subjects(s)));
        d = load(fullfile(subjectStruct{s}.dir,'results','SPM.mat'));
        subjectStruct{s}.des = d.SPM;
        subjectStruct{s}.name = cell2mat(subjects(s));
        
        map = load(fullfile(subjectStruct{s}.dir,'results','roi','coord_map.mat'));
        subjectStruct{s}.coords = getSubjectCoordinates(args.coords,map);
        
        disp('fetching volume definitions, please wait');
        subjectStruct{s}.volumes = spm_vol(getImageFileList(subjectStruct{s}.dir,sessionlist,args.mask));

rawData = calculateImageData(subjectStruct{s}.volumes,subjectStruct{s}.coords)
        
        disp('done');
    end
end

% 
% %         decode = claculateMultiSubjectDecodePerformance(timelineParams,calculateParams,paramModel);
% 
%         display('Finished calculations.');
%         display('Plotting...');
% 
%         plotParams                   = struct;
%         
% %         plotParams.SVMCROSSVAL_CROSSVAL_METHOD_DEF = SVMCROSSVAL_CROSSVAL_METHOD_DEF;
%         plotParams.CROSSVAL_METHOD     = calculateParams.CROSSVAL_METHOD;
%         
%         plotParams.nClasses          = length(calculateParams.classList);
% 
%         plotParams.decodePerformance = decode.decodePerformance;
%         plotParams.rawTimeCourse     = decode.rawTimeCourse;
%         plotParams.SubjectID         = subjectSelection;
%         plotParams.smoothed          = boolToYesNoString(calculateParams.smoothed);
% 
%         assignin('base','plotParams',plotParams);
% %         plotDecodePerformance(params.psthStart,params.psthEnd,params.nClasses,decode.decodeTable,params.frameShiftStart,params.frameShiftEnd,decode.rawTimeCourse);
%         plotDecodePerformance(timelineParams,plotParams);
%             
%         display('all done.');
%

SVMCrossVal.git

coordTabel works for JZ006