function ui_main(varargin)
% Initialize and hide the GUI as it is being constructed.
frameWidth=450;
frameHeight=450;
frame = figure('Visible','off','Position',[0,0,frameWidth,frameHeight]);
movegui(frame,'center'); % get this thing visible on smaller displays.
set(frame,'Name','NODalyze');
set(frame,'NumberTitle','off');
set(frame,'MenuBar','none');
set(frame,'Resize','on');
set(frame,'Units','normalized');
set(frame,'Color','y');
task = struct;
model = struct;
model.txtBaseDir = createLabel(frame,[0 0.97 0.8 0.03],'');
set(model.txtBaseDir,'BackgroundColor','w');
set(model.txtBaseDir,'ForegroundColor','b');
model.txtStudyID = createLabel(frame,[0.8 0.97 0.2 0.03],'');
set(model.txtStudyID,'BackgroundColor','w');
set(model.txtStudyID,'ForegroundColor','r');
TASK_HEIGHT = 1-0.13;
% PREPROCESSING
task.preprocessing = uipanel(frame,'Title','Preprocessing','Position',[0 0.0 1 TASK_HEIGHT]);
set(task.preprocessing,'BackgroundColor','w');
set(task.preprocessing,'Units','normalized');
model = createFirstStepPanel(model,task.preprocessing);
% CLASSIFICATION
task.classification = uipanel(frame,'Title','Classification','Position',[0 0.0 1 TASK_HEIGHT]);
set(task.classification,'BackgroundColor','w');
model = createSecondStepPanel(model,task.classification);
% PLOT
task.plot = uipanel(frame,'Title','Plot','Position',[0 0.0 1 TASK_HEIGHT]);
set(task.plot,'BackgroundColor','w');
model = createVisualStepPanel(model,task.plot);
% TASK SWITCH BUTTONS
task.taskSwitch = uibuttongroup(frame,'Position',[0 1-0.13 1 0.10]);
% controlls togglebuttons
set(task.taskSwitch,'BackgroundColor','w');
set(task.taskSwitch,'Units','normalized');
btnSwitchPreprocessing = uicontrol(task.taskSwitch,'Style','pushbutton',...
'String','Image Processing',...
'Units','normalized','Position',[0.0 0.0 0.33 1]);
set(btnSwitchPreprocessing,'Callback',{@cbSwitchTask,'PRE',task});
set(btnSwitchPreprocessing,'Enable','on');
btnSwitchClassify = uicontrol(task.taskSwitch,'Style','pushbutton',...
'String','Decode',...
'Units','normalized','Position',[0.33 0.0 0.33 1]);
set(btnSwitchClassify,'Callback',{@cbSwitchTask,'CLASSIFY',task});
set(btnSwitchClassify,'Enable','on');
btnSwitchPlot = uicontrol(task.taskSwitch,'Style','pushbutton',...
'String','Plot',...
'Units','normalized','Position',[0.66 0.0 0.33 1]);
set(btnSwitchPlot,'Callback',{@cbSwitchTask,'PLOT',task});
set(btnSwitchPlot,'Enable','on');
% MENUS
savemenu = uimenu(frame,'Label','Save ...','Enable','on');
uimenu(savemenu,'Label','Save Parameter','Callback',{@mcb_save,'PARAMS',model},'Enable','on');
uimenu(savemenu,'Label','Save ImageProcesseding Data','Callback',{@mcb_save,'IMAGEPROCESSING',model},'Enable','on');
uimenu(savemenu,'Label','Load ImageProcesseding Data','Callback',{@mcb_load,'IMAGEPROCESSING',model},'Enable','on');
uimenu(savemenu,'Label','Save Decode Data','Callback',{@mcb_save,'DECODE',model},'Enable','on');
uimenu(savemenu,'Label','Load Decode Data','Callback',{@mcb_load,'DECODE',model},'Enable','on');
studySelectMenu = uimenu(frame,'Label','Study ...','Enable','on');
uimenu(studySelectMenu,'Label','*new Study*','Callback',{@mcb_new_study,studySelectMenu,model});
fillStudyMenu(studySelectMenu,model);
updateMenu = uimenu(frame,'Label','Update ...','Enable','on');
uimenu(updateMenu,'Label','rescan subject dir','Callback',{@mcb_update_subjects,model});
uimenu(updateMenu,'Label','rescan images','Callback',{@mcb_update_imagebase,model});
% newStudyMenu = uimenu(frame,'Label','new Study','Enable','on');
load_study([getPreviousStudyID '.mat'],model);
cbSwitchTask(0,0,'PRE',task);
set(frame,'Visible','on');
end
%%%%% ui elements
function model = createFirstStepPanel(model,parent)
norm1Model = {'none','mean','minmax'};
roiGroupMethodNames = {'none','mean','max','median'};
roiGroupMethodFunctions = {@(in)in, @(in)nanmean(in),@(in)nanmax(in),@(in)nanmedian(in)};
main_grid = cell(2,4);
main_grid{1,1} = [0 0.7 0.4 0.3];
main_grid{1,2} = [0 0.5 0.5 0.2];
main_grid{1,3} = [0 0.1 0.5 0.4];
main_grid{1,4} = [0 0.0 1.0 0.1];
main_grid{2,1} = [0.4 0.7 0.6 0.3];
main_grid{2,2} = [0.5 0.1 0.5 0.6];
% main_grid{2,3} = [0.5 0.1 0.5 0.4];
%Subjects
pSubject = uipanel(parent,'Units','normalized','Position',cell2mat(main_grid(1,1)));
set(pSubject,'Title','Subjects');
set(pSubject,'BackgroundColor','w');
% subjectNames = listDirNames(getBaseDir(model));
model.subjectSelector = uicontrol(pSubject,'Style','listbox',...
'Min',1, 'Max',3,...
'Units','normalized',...
'Position',[0 0 1 1]);
set(model.subjectSelector, 'FontName', 'FixedWidth');
set(model.subjectSelector,'BackgroundColor','w');
%Classes
pClasses = uipanel(parent,'Units','normalized','Position',cell2mat(main_grid(1,2)));
set(pClasses,'Title','Class Definitions');
set(pClasses,'BackgroundColor','w');
lClassDef = uicontrol(pClasses,...
'Style','text',...
'String',sprintf('<Label>,\t <[Event, Event, ..]>;'),...
'Units','normalized',...
'Position',[0 0.8 1 0.2]);
set(lClassDef,'BackgroundColor','w');
set(lClassDef,'HorizontalAlignment','left');
model.txtClassDef = uicontrol(pClasses,'Style','edit',...
'Units','normalized',...
'Position',[0 0 1 0.8]);
set(model.txtClassDef,'HorizontalAlignment','left');
set(model.txtClassDef,'Max',20);
set(model.txtClassDef,'Min',0);
set(model.txtClassDef, 'FontName', 'FixedWidth');
set(model.txtClassDef, 'BackgroundColor', 'w');
%Timeline
pPSTH = uipanel(parent,'Title','PST Options','Position',cell2mat(main_grid(2,1)));
set(pPSTH,'BackgroundColor','w');
grid_h = 0.16;
grid_w = 0.3;
tl_grid = cell([3 6]);
tl_grid{2,1} = [0.0 0.83 grid_w grid_h];
tl_grid{2,1} = [0.4 0.83 grid_w grid_h];
tl_grid{3,1} = [0.7 0.83 grid_w grid_h];
tl_grid{1,2} = [0.0 0.66 grid_w grid_h];
tl_grid{2,2} = [0.4 0.66 grid_w grid_h];
tl_grid{3,2} = [0.7 0.66 grid_w grid_h];
tl_grid{1,3} = [0.0 0.5 grid_w grid_h];
tl_grid{2,3} = [0.4 0.5 grid_w grid_h];
tl_grid{3,3} = [0.7 0.5 grid_w grid_h];
tl_grid{1,4} = [0.0 0.33 grid_w grid_h];
tl_grid{2,4} = [0.4 0.33 grid_w grid_h];
tl_grid{3,4} = [0.7 0.33 grid_w grid_h];
tl_grid{1,5} = [0.0 0.16 grid_w grid_h];
tl_grid{2,5} = [0.4 0.16 grid_w grid_h];
tl_grid{3,5} = [0.7 0.16 grid_w grid_h];
tl_grid{1,6} = [0.0 0.0 0.5 grid_h];
tl_grid{2,6} = [0.5 0.0 grid_w grid_h];
tl_grid{3,6} = [0.75 0.0 grid_w grid_h];
lStart = createLabel(pPSTH, cell2mat(tl_grid(2,1)) ,'Start [sec]');
lEnd = createLabel(pPSTH, cell2mat(tl_grid(3,1)) ,'End [sec]');
lPSTH = createLabel(pPSTH, cell2mat(tl_grid(1,2)) ,'PST Range');
lBaseline = createLabel(pPSTH, cell2mat(tl_grid(1,3)) ,'Baseline');
lTRF = createLabel(pPSTH, cell2mat(tl_grid(1,5)) ,'TR Factor');
lTRSec = createLabel(pPSTH, cell2mat(tl_grid(3,4)) ,'TR [sec]');
model.txtPSTHStart = createTextField(pPSTH,cell2mat(tl_grid(2,2)),'');
model.txtPSTHEnd = createTextField(pPSTH,cell2mat(tl_grid(3,2)),'');
model.txtBaselineStart = createTextField(pPSTH,cell2mat(tl_grid(2,3)),'');
model.txtBaselineEnd = createTextField(pPSTH,cell2mat(tl_grid(3,3)),'');
model.txtTrFactor = createTextField(pPSTH,cell2mat(tl_grid(2,5)),'');
model.labelTR = createTextField(pPSTH,cell2mat(tl_grid(3,5)),'');
% OPTIONS
grid_h = 0.16;
grid_wl = 0.4;
grid_wo = 0.6;
optGrid = cell([3 6]);
optGrid{1,1} = [0.0 0.83 grid_wl grid_h];
optGrid{2,1} = [0.4 0.83 grid_wo grid_h];
optGrid{1,2} = [0.0 0.66 grid_wl grid_h];
optGrid{2,2} = [0.4 0.66 grid_wo grid_h];
optGrid{1,3} = [0.0 0.5 1.0 grid_h];
% optGrid{2,3} = [0.4 0.5 grid_wo grid_h];
optGrid{1,4} = [0.0 0.33 grid_wl grid_h];
optGrid{2,4} = [0.4 0.33 grid_wo grid_h];
optGrid{1,5} = [0.0 0.16 1.0 grid_h];
% optGrid{2,5} = [0.4 0.16 grid_wo grid_h];
optGrid{1,6} = [0.0 0.0 grid_wl grid_h];
optGrid{2,6} = [0.4 0.0 grid_wo grid_h];
% Options:Imagebase
pOptions = uipanel(parent,'Title','Options','Position',cell2mat(main_grid(2,2)));
set(pOptions,'BackgroundColor','w');
createLabel(pOptions,cell2mat(optGrid(1,1)),'Image Base');
model.imageTypeSelection = uicontrol(pOptions,'Style','popupmenu',...
'Units','normalized',...
'Position',cell2mat(optGrid(2,1)));
set(model.imageTypeSelection,'BackgroundColor','w');
%Options:normalizations
createLabel(pOptions,cell2mat(optGrid(1,2)),'PST normalization');
model.selNormPST = uicontrol(pOptions,'Style','popupmenu',...
'Units','normalized',...
'Position',cell2mat(optGrid(2,2)),...
'String',norm1Model,...
'UserData',norm1Model);
set(model.selNormPST,'BackgroundColor','w');
model.chkColBias = uicontrol(pOptions,'Style','checkbox',...
'Units','normalized',...
'Position',cell2mat(optGrid(1,3)),...
'String','Remove Column Bias within class',...
'Enable','on');
set(model.chkColBias,'BackgroundColor','w');
%Options:spatialGrouping
createLabel(pOptions,cell2mat(optGrid(1,4)),'Spatial Grouping');
model.selRoiGrouping = uicontrol(pOptions,'Style','popupmenu',...
'Units','normalized',...
'Position',cell2mat(optGrid(2,4)),...
'String',roiGroupMethodNames,...
'UserData',roiGroupMethodFunctions);
set(model.selRoiGrouping,'BackgroundColor','w');
%Options:VOI selection for FBS
btnRunButton2 = uicontrol(pOptions,'String',sprintf('load VOI for Searchlight'),...
'Units','normalized','Position',cell2mat(optGrid(1,5)));
set(btnRunButton2,'Enable','on');
% COORD TABLE
pVoxel = uipanel(parent,'Title','Select ROIs','Position',cell2mat(main_grid(1,3)));
set(pVoxel,'BackgroundColor','w');
lVoxelDef = createLabel(pVoxel, [0 0.9 1 0.1],'<ROI Name> [+ radius (mm)];');
model.txtVoxelDef = createTextField(pVoxel,[0 0.15 1 0.75],'');
set(model.txtVoxelDef,'HorizontalAlignment','left');
set(model.txtVoxelDef,'Max',20);
set(model.txtVoxelDef,'Min',0);
set(model.txtVoxelDef, 'FontName', 'FixedWidth');
btnROIlist = uicontrol(pVoxel,'String','show available ROIs','Units','normalized',...
'Position',[0 0 1 0.15]);
set(btnROIlist,'Enable','on');
%buttons
pButtons = uipanel(parent,'Position',cell2mat(main_grid(1,4)));
set(pButtons,'BackgroundColor','w');
btnRunButton1 = uicontrol(pButtons,'String','start ROI-List processing',...
'Units','normalized','Position',[0 0 0.33 1]);
set(btnRunButton1,'Enable','on');
btnRunButton3 = uicontrol(pButtons,'String','start ROI-Image processing',...
'Units','normalized','Position',[0.66 0 0.33 1]);
set(btnRunButton3,'Enable','on');
set(btnRunButton1,'Callback',{@cbRunPreprocessing,model,'COORD'}); % set here, because of model.
set(btnRunButton2,'Callback',{@cbRunPreprocessing,model,'FBS'}); % set here, because of model.
set(btnRunButton3,'Callback',{@cbRunPreprocessing,model,'ROI'}); % set here, because of model.
set(btnROIlist, 'Callback',{@cbShowAvailableROIs,model}); % set here, because of model.
end
function model = createSecondStepPanel(model,parent)
basecolor = 'w';
TimeframeGroupingStrings = {'none','mean'};%,'sum,'max','median'};
TimeframeGroupingFunctions = {@(in)in,@(in)nanmean(in,2)};%,'sum',','max','median'};
pTime = uipanel(parent,'Units','normalized','Position',[0.0 0.7 1 0.3]);
set(pTime,'Title','Decode Timerange Options');
set(pTime,'BackgroundColor',basecolor);
grid_h = 0.25;
grid_w = 0.3;
time_grid = cell([3 4]);
time_grid{1,1} = [0.0 0.75 grid_w grid_h];
time_grid{2,1} = [0.4 0.75 grid_w grid_h];
time_grid{3,1} = [0.7 0.75 grid_w grid_h];
time_grid{1,2} = [0.0 0.50 grid_w grid_h];
time_grid{2,2} = [0.4 0.50 grid_w grid_h];
time_grid{3,2} = [0.7 0.50 grid_w grid_h];
time_grid{1,3} = [0.0 0.25 grid_w grid_h];
time_grid{2,3} = [0.4 0.25 grid_w grid_h];
time_grid{3,3} = [0.7 0.0 grid_w grid_h];
time_grid{1,4} = [0.0 0.0 grid_w grid_h];
time_grid{2,4} = [0.4 0.0 grid_w grid_h];
time_grid{3,4} = [0.7 0.0 grid_w grid_h];
lStart = createLabel(pTime, cell2mat(time_grid(2,1)) ,'Start [sec]');
lEnd = createLabel(pTime, cell2mat(time_grid(3,1)) ,'End [sec]');
lFrameShift = createLabel(pTime, cell2mat(time_grid(1,2)),'Time Range');
lFramsSize = createLabel(pTime, cell2mat(time_grid(1,3)),'Shifting Time Frame [sec]');
lFramegroup = createLabel(pTime, cell2mat(time_grid(1,4)),'Time Frame Grouping');
model.txtFrameShiftStart = createTextField(pTime,cell2mat(time_grid(2,2)),'');
model.txtFrameShiftEnd = createTextField(pTime,cell2mat(time_grid(3,2)),'');
model.txtFrameShiftDur = createTextField(pTime,cell2mat(time_grid(2,3)),'');
model.selTimeframeGrouping = uicontrol(pTime,'Style','popupmenu',...
'Units','normalized',...
'Position',cell2mat(time_grid(2,4)),...
'String',TimeframeGroupingStrings,...
'UserData',TimeframeGroupingFunctions);
set(model.selTimeframeGrouping,'Enable','on');
pSVM = uipanel(parent,'Units','normalized','Position',[0 0.0 0.499 0.7]);
set(pSVM,'Title','SVM Classification (libSVM)');
set(pSVM,'BackgroundColor',basecolor);
grid_h = 0.125;
svmgrid = cell([2 8]);
svmgrid{1,1} = [0.0 0.875 1.0 grid_h];
svmgrid{1,2} = [0.0 0.750 0.5 grid_h];
svmgrid{2,2} = [0.5 0.750 0.5 grid_h];
svmgrid{1,3} = [0.0 0.625 1 grid_h];
svmgrid{1,4} = [0.0 0.5 1 grid_h];
svmgrid{1,5} = [0.0 0.375 1 grid_h];
svmgrid{1,6} = [0.0 0.250 0.5 grid_h];
svmgrid{2,6} = [0.5 0.250 0.5 grid_h];
svmgrid{1,7} = [0.0 0.125 0.5 grid_h];
svmgrid{2,7} = [0.5 0.125 0.5 grid_h];
svmgrid{1,8} = [0.0 0.0 1 grid_h];
model.txtSVMopts = createTextField(pSVM,cell2mat(svmgrid(1,1)),'');
set(model.txtSVMopts,'HorizontalAlignment','left');
model.txtSVMnfold = createTextField(pSVM,cell2mat(svmgrid(1,2)),'');
createLabel(pSVM,cell2mat(svmgrid(2,2)),'-Fold CrossVal');
btnRunSVM = uicontrol(pSVM,'String','run SVM within-Subject crossvalidation',...
'Units','normalized',...
'Position',cell2mat(svmgrid(1,3)));
set(btnRunSVM,'Enable','on');
btnRunXSVM = uicontrol(pSVM,'String','run SVM across-Subject crossvalidation',...
'Units','normalized',...
'Position',cell2mat(svmgrid(1,4)));
set(btnRunXSVM,'Enable','on');
lSearchligh = createLabel(pSVM, cell2mat(svmgrid(1,6)),'Searchlight Radius (mm)');
model.txtSearchlightRadius = createTextField(pSVM,cell2mat(svmgrid(2,6)),'');
lFBSTiming = createLabel(pSVM, cell2mat(svmgrid(1,7)),'Timepoints [sec] (opt.)');
set(lFBSTiming,'TooltipString','e.g. ''-5 0 5 10 15''');
model.txtSearchlightTimeline = createTextField(pSVM,cell2mat(svmgrid(2,7)),'');
btnRunFBS = uicontrol(pSVM,'String','run Searchlight',...
'Units','normalized',...
'Position',cell2mat(svmgrid(1,8)));
set(btnRunFBS,'Enable','on');
pSOM = uipanel(parent,'Units','normalized','Position',[0.5 0.3 0.499 0.4]);
set(pSOM,'Title','SOM Classification (somtoolbox2)');
set(pSOM,'BackgroundColor',basecolor);
createLabel(pSOM,[0 0.75 0.3 0.20],'Size:');
model.txtSomM = createTextField(pSOM,[0.3 0.75 0.25 0.16],'');
somsizemal = createLabel(pSOM,[0.55 0.75 0.2 0.16],'x');
set(somsizemal,'HorizontalAlignment','center');
model.txtSomN = createTextField(pSOM,[0.75 0.75 0.25 0.16],'');
latticeModel = {'rect','hexa'};
model.selSomLattice = uicontrol(pSOM,'Style','popupmenu',...
'Units','normalized',...
'Position',[0.0 0.5 0.3 0.16],...
'String',latticeModel,...
'UserData',latticeModel);
set(model.selSomLattice,'BackgroundColor','w');
model.txtSOMnfold = createTextField(pSOM,[0.5 0.50 0.25 0.16],'');
createLabel(pSOM,[0.75 0.5 0.25 0.16 ],'-Fold CrossVal');
btnRunSOM = uicontrol(pSOM,'String','run SOM within-Subject crossvalidation',...
'Units','normalized',...
'Position',[0.0 0.25 1 0.25]);
set(btnRunSOM,'Enable','on');
btnRunXSOM = uicontrol(pSOM,'String','run SOM across-Subject crossvalidation',...
'Units','normalized',...
'Position',[0.0 0.0 1 0.25]);
set(btnRunXSOM,'Enable','on');
% OPTIONS
pOptions = uipanel(parent,'Units','normalized','Position',[0.5 0 0.5 0.3]);
set(pOptions,'Title','Other Options');
set(pOptions,'BackgroundColor',basecolor);
model.chkSVMrnd = uicontrol(pOptions,'Style','checkbox','Units','normalized','Position',[0 0.66 1 0.33]);
set(model.chkSVMrnd,'String','Randomize Trial Order');
set(model.chkSVMrnd,'BackgroundColor','w');
% button callbacks set here, because of model.
set(btnRunSVM, 'Callback',{@cbRunDecode,model,'SVM'});
set(btnRunXSVM,'Callback',{@cbRunDecode,model,'XSVM'});
set(btnRunSOM, 'Callback',{@cbRunDecode,model,'SOM'});
set(btnRunXSOM,'Callback',{@cbRunDecode,model,'XSOM'});
set(btnRunFBS, 'Callback',{@cbRunDecode,model,'FBS'});
end
function model = createVisualStepPanel(model,parent)
grid_h = 0.125;
grid_w = 0.5;
plot_grid = cell([3 8]);
plot_grid{1,1} = [0.0 0.63 grid_w grid_h];
plot_grid{1,2} = [0.0 0.33 grid_w grid_h];
plot_grid{1,3} = [0.0 0.03 grid_w grid_h];
plot_grid{2,1} = [0.25 (1-1*grid_h) grid_w grid_h];
plot_grid{2,2} = [0.25 (1-2*grid_h) grid_w grid_h];
plot_grid{2,3} = [0.25 (1-3*grid_h) grid_w grid_h];
plot_grid{2,4} = [0.25 (1-4*grid_h) grid_w grid_h];
plot_grid{2,5} = [0.25 (1-5*grid_h) grid_w grid_h];
plot_grid{2,6} = [0.25 (1-6*grid_h) grid_w grid_h];
plot_grid{2,7} = [0.25 (1-7*grid_h) grid_w grid_h];
plot_grid{2,8} = [0.25 (1-8*grid_h) grid_w grid_h];
pButtonPane = uipanel(parent,'Units','normalized','Position',[0 0.5 1 0.5]);
% set(pButtonPane,'Title','Plot');
set(pButtonPane,'BackgroundColor','w');
btnPlot03 = uicontrol(pButtonPane,'String','Plot PSTH',...
'Units','normalized',...
'Position',cell2mat(plot_grid(2,1)));
set(btnPlot03,'Callback',{@cbPlot,model,'psth'});
set(btnPlot03,'Enable','on');
btnPlot01 = uicontrol(pButtonPane,'String','Plot Decode Performance +/- SE',...
'Units','normalized',...
'Position',cell2mat(plot_grid(2,2)));
set(btnPlot01,'Callback',{@cbPlot,model,'simple'});
set(btnPlot01,'Enable','on');
btnPlot02 = uicontrol(pButtonPane,'String','Plot Individual Performance and Mean +/- SE',...
'Units','normalized',...
'Position',cell2mat(plot_grid(2,3)));
set(btnPlot02,'Callback',{@cbPlot,model,'x-subject-val'});
set(btnPlot02,'Enable','on');
btnPlotT1 = uicontrol(pButtonPane,'String','Plot Trajectory (t vs A vs B)',...
'Units','normalized',...
'Position',cell2mat(plot_grid(2,4)));
set(btnPlotT1,'Callback',{@cbPlot,model,'trajectory'});
set(btnPlotT1,'Enable','on');
btnPlotT2 = uicontrol(pButtonPane,'String','Plot Trajectory (A vs B vs C)',...
'Units','normalized',...
'Position',cell2mat(plot_grid(2,5)));
set(btnPlotT2,'Callback',{@cbPlot,model,'trajectory3'});
set(btnPlotT2,'Enable','on');
end
%%%%% ui callbacks
function cbShowAvailableROIs(src,evtl,model)
ui_showAvailableROIs(model);
end
function cbSwitchTask(src,evnt,task,taskpanel)
set(taskpanel.preprocessing,'Visible','off');
set(taskpanel.classification,'Visible','off');
set(taskpanel.plot,'Visible','off');
switch task
case 'PRE'
set(taskpanel.preprocessing,'Visible','on');
case 'CLASSIFY'
set(taskpanel.classification,'Visible','on');
case 'PLOT'
set(taskpanel.plot,'Visible','on');
end
% assignin('base','model',model);
end
function cbRunPreprocessing(src,evnt,model,task)
main(model,'pre',task);
end
function cbRunDecode(src,evnt,model,task)
main(model,'decode',task);
end
function cbPlot(src,evnt,model,type)
main(model,'plot',type);
end
%%%%%%%%%% menu callbacks
function mcb_save(src,evnt,token,model)
switch token
case 'PARAMS'
studyID = get(model.txtStudyID,'String');
saveStudy(studyID,model);
case 'IMAGEPROCESSING'
disp('save img data..');
[FileName,PathName,FilterIndex] = uiputfile('*.mat','Save ImageProcessing Data') ;
if(~strcmp(FileName,''))
evalin('base', sprintf('save(''%s'',''%s'')',fullfile(PathName,FileName),'preprocessedData'));
disp('saved');
end
% [FileName,PathName,FilterIndex] = uigetfile('*.mat','Load ImageProcessing Data')
% evalin('base', sprintf('load(%s,%s)',fullfile(PathName,FileName),'preprocessedData'));
case 'DECODE'
disp('save decode data..');
[FileName,PathName,FilterIndex] = uiputfile('*.mat','Save Decode Data') ;
if(~strcmp(FileName,''))
evalin('base', sprintf('save(''%s'',''%s'')',fullfile(PathName,FileName),'decode'));
disp('saved');
end
end
end
function mcb_load(src,evnt,token,model)
switch token
case 'IMAGEPROCESSING'
disp('load img data..');
[FileName,PathName,FilterIndex] = uigetfile('*.mat','Load ImageProcessing Data') ;
if(~strcmp(FileName,''))
evalin('base', sprintf('load(''%s'',''%s'')',fullfile(PathName,FileName),'preprocessedData'));
disp('done');
end
case 'DECODE'
disp('load decode data..');
[FileName,PathName,FilterIndex] = uigetfile('*.mat','Load Decode Data') ;
if(~strcmp(FileName,''))
evalin('base', sprintf('load(''%s'',''%s'')',fullfile(PathName,FileName),'decode'));
disp('done');
end
end
end
function mcb_update_subjects(src,evnt,model)
studyID = get(model.txtStudyID,'String');
baseDir = getBaseDir(model);
subjectNames = listDirNames(baseDir);
set(model.subjectSelector,'String',subjectNames);
set(model.subjectSelector,'UserData',subjectNames);
set(model.subjectSelector,'Value',1);
saveStudy(studyID,model);
end
function mcb_update_imagebase(src,evnt,model)
studyID = get(model.txtStudyID,'String');
subjectNames = getSubjectCellList(model);
imageDir = fullfile(getBaseDir(model),cell2mat(subjectNames(1)));
imageMask = imageMaskNames(imageDir);
set(model.imageTypeSelection,'String',imageMask);
set(model.imageTypeSelection,'UserData',imageMask);
set(model.imageTypeSelection,'Value',1);
saveStudy(studyID,model);
end
function mcb_new_study(src,evnt,studymenu,uimodel)
studyID = get(uimodel.txtStudyID,'String');
saveStudy(studyID,uimodel);
display('CREATE STUDY');
ui_createStudy(studymenu,uimodel);
end