SVMCrossVal.git

moved UI stuff. new project structure in the making
Parent 3d9198f
Christoph Budziszewski

Christoph Budziszewski commited on 2009-01-12 17:57:09
Zeige 4 geänderte Dateien mit 356 Einfügungen und 202 Löschungen. 

git-svn-id: https://svn.discofish.de/MATLAB/spmtoolbox/SVMCrossVal@108 83ab2cfd-5345-466c-8aeb-2b2739fb922d
private/main_UI.m
Zeige Datei @ 0d4f7cd
... ... 
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+function main_UI(args)
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+
3 
+
4 
+%  Initialize and hide the GUI as it is being constructed.
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+    frameWidth=450;
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+    frameHeight=600;
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+    frame = figure('Visible','off','Position',[0,0,frameWidth,frameHeight]);
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+    movegui(frame,'west'); % get this thing visible on smaller displays.
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+
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+    set(frame,'Name','SVMCrossVal Decode Performance 4 SPM');
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+    set(frame,'NumberTitle','off');
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+    set(frame,'MenuBar','none');
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+    set(frame,'Color',get(0,'defaultUicontrolBackgroundColor'));
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+    set(frame,'Resize','off');
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+    set(frame,'Units','normalize');
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+
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+
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+    savemenu = uimenu(frame,'Label','Save/Load');
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+
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+    model.subjectMap = SubjectRoiMapping;
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+    nElementRows = 24;
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+    optionLineHeight = 1.0/nElementRows;
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+    controlElementHeight=optionLineHeight*(1.0/1.5)*frameHeight;
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+    pSubject     = uipanel(frame,'Title','Subject',          'Position',[0 optionLineHeight*19 frameWidth optionLineHeight*5]);
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+    pPSTH        = uipanel(frame,'Title','PSTH Options',     'Position',[0 optionLineHeight*14 frameWidth optionLineHeight*5]);
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+    pCLASS       = uipanel(frame,'Title','Class Definitions','Position',[0 optionLineHeight*9  frameWidth optionLineHeight*5]);
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+    pVOXEL       = uipanel(frame,'Title','Voxel Selector',   'Position',[0 optionLineHeight*3  frameWidth optionLineHeight*6]);
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+    pSVM         = uipanel(frame,'Title','SVM Options',      'Position',[0 optionLineHeight*1  frameWidth optionLineHeight*2]);
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+    btnRunButton = uicontrol(frame,'Tag','run','String','run decode-performance visualiser','Position',[2 optionLineHeight*0  frameWidth controlElementHeight*1.6]);
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+
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+
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+    % Subject
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+    firstColumn  =  5.00;
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+    firstRow     =  1.00 * controlElementHeight;
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+
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+    model.subjectSelector = uicontrol(pSubject,'Style','listbox',...
37 
+                    'Min',1, 'Max',3,...
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+                    'String',getSubjectCellList(model.subjectMap),...
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+                    'Value',5,...  % default selected item
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+                    'Position',[firstColumn firstRow 0.66*frameWidth controlElementHeight*6]);
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+    set(model.subjectSelector,'BackgroundColor','w');
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+
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+    model.txtSmoothed     = createTextField(pSubject,[0.68*frameWidth firstRow  0.25*frameWidth controlElementHeight],'1');
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+    model.txtMultisubject = createTextField(pSubject,[0.68*frameWidth firstRow*2  0.25*frameWidth controlElementHeight],'single');
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+    set(model.txtMultisubject,'enable','off');
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+
47 
+    % PSTH
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+    firstColumn  = 5.00;
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+    secondColumn = 0.33*frameWidth;
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+    thirdColumn  = 0.66*frameWidth;
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+%     fourthColumn = 0.84*frameWidth;
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+
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+    firstRow    = 5.5*controlElementHeight;
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+    secondRow   = 4.5*controlElementHeight;
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+    thirdRow    = 3.5*controlElementHeight;
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+    fourthRow   = 2.5*controlElementHeight;
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+    fifthRow    = 1.0*controlElementHeight;
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+
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+    lStart      = createLabel(pPSTH, [secondColumn firstRow  0.33*frameWidth controlElementHeight],'Start [sec]');
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+    lEnd        = createLabel(pPSTH, [thirdColumn  firstRow  0.33*frameWidth controlElementHeight],'End [sec]');
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+    lPSTH       = createLabel(pPSTH, [firstColumn  secondRow 0.33*frameWidth controlElementHeight],'PSTH Range');
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+    lBaseline   = createLabel(pPSTH, [firstColumn  thirdRow  0.33*frameWidth controlElementHeight],'Baseline');
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+    lFrameShift = createLabel(pPSTH, [firstColumn  fourthRow 0.33*frameWidth controlElementHeight],'SVM Frame Shift');
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+    lFramsSize  = createLabel(pPSTH, [firstColumn  fifthRow  0.33*frameWidth controlElementHeight],'SVM Frame Size');
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+
66 
+
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+    model.txtPSTHStart       = createTextField(pPSTH,[secondColumn secondRow 0.25*frameWidth controlElementHeight],'-10.0');
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+    model.txtPSTHEnd         = createTextField(pPSTH,[thirdColumn  secondRow 0.25*frameWidth controlElementHeight],' 40.0');
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+    model.txtBaselineStart   = createTextField(pPSTH,[secondColumn thirdRow  0.25*frameWidth controlElementHeight],'-3.0');
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+    model.txtBaselineEnd     = createTextField(pPSTH,[thirdColumn  thirdRow  0.25*frameWidth controlElementHeight],'-1.0');
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+    model.txtFrameShiftStart = createTextField(pPSTH,[secondColumn fourthRow 0.25*frameWidth controlElementHeight],'-5.0');
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+    model.txtFrameShiftEnd   = createTextField(pPSTH,[thirdColumn  fourthRow 0.25*frameWidth controlElementHeight],' 35.0');
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+    model.txtFrameShiftDur   = createTextField(pPSTH,[secondColumn fifthRow  0.25*frameWidth controlElementHeight],' 0');
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+
75 
+
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+    %Classes
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+    nClassRows = 6;
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+    firstColumn  = 5.00;
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+
80 
+    firstRow    = (nClassRows-0.5)*controlElementHeight;
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+    secondRow   = (nClassRows-4.5)*controlElementHeight;
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+
83 
+    lClassDef = createLabel(pCLASS, [firstColumn firstRow  0.66*frameWidth controlElementHeight],'<Label>,<[Event,Event,..]>,<SVM-Value>;');
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+    model.txtClassDef = createTextField(pCLASS,[firstColumn secondRow 0.98*frameWidth 4*controlElementHeight],sprintf('DRT,\t[9,10],\t-2 ;\nM2ST,\t[11,12],\t-1;'));
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+    set(model.txtClassDef,'HorizontalAlignment','left');
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+    set(model.txtClassDef,'Max',20);
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+    set(model.txtClassDef,'Min',0);
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+    set(model.txtClassDef, 'FontName', 'FixedWidth')
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+
90 
+    %Voxel
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+    nVoxelRows = 8;
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+    firstColumn  = 5.00;
93 
+
94 
+    firstRow    = (nVoxelRows-0.5)*controlElementHeight;
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+    secondRow   = (nVoxelRows-7.5)*controlElementHeight;
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+
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+    lVoxelDef = createLabel(pVOXEL, [firstColumn firstRow  0.66*frameWidth controlElementHeight],'<ROI Name>,<ROI Modifier>;');
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+    model.txtVoxelDef = createTextField(pVOXEL,[firstColumn secondRow 0.98*frameWidth 6*controlElementHeight],...
99 
+        sprintf('SPL l,\t[ 0, 0, 0];\nSPL r,\t[ 0, 0, 0];\n'));
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+    set(model.txtVoxelDef,'HorizontalAlignment','left');
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+    set(model.txtVoxelDef,'Max',20);
102 
+    set(model.txtVoxelDef,'Min',0);
103 
+    set(model.txtVoxelDef, 'FontName', 'FixedWidth')
104 
+
105 
+    % SVM
106 
+    firstColumn  =  5.00;
107 
+    firstRow     =  1.00 * controlElementHeight;
108 
+
109 
+    model.txtSVMopts = createTextField(pSVM,[firstColumn firstRow  0.66*frameWidth controlElementHeight],'-s 0 -t 0 -v 6 -c 1');
110 
+    %model.txtSVMopts = createTextField(pSVM,[firstColumn firstRow  0.66*frameWidth controlElementHeight],'-s 0 -t 2 -v 6 -c 10 -g .1');
111 
+    set(model.txtSVMopts,'Enable','on'); %inactive
112 
+    set(model.txtSVMopts,'HorizontalAlignment','left');
113 
+
114 
+    set(btnRunButton,'Callback',{@cbRunSVM,model}); % set here, because of model.
115 
+    uimenu(savemenu,'Label','Save','Callback',{@mcb_save,model});
116 
+    uimenu(savemenu,'Label','Load','Callback',{@mcb_load,model});
117 
+
118 
+    set(frame,'Visible','on');
119 
+end
120 
+
121 
+function mcb_save(src,event,model)
122 
+display('SAVE');
123 
+
124 
+end
125 
+
126 
+function mcb_load(src,event,model)
127 
+display('LOAD');
128 
+end
129 
+
130 
+function sane = isSane(model)
131 
+% TODO
132 
+sane = 1;
133 
+end
134 
+
135 
+function cbRunSVM(src,evnt,model)
136 
+    display('RUN');
137 
+    if isSane(model)
138 
+        classify(model)
139 
+    else
140 
+        error('spmtoolbox:SVMCrossVal:paramcheck','please verify all parameters');
141 
+    end
142 
+end
143 
+
144 
+
145 
+function label = createLabel(parent,  pos, labelText)
146 
+    label = uicontrol(parent,'Style','text','String',labelText,'Position',pos);
147 
+    set(label,'HorizontalAlignment','left');
148 
+    set(label,'Units','characters');
149 
+%     set(label,'BackgroundColor','r');
150 
+end
151 
+
152 
+function btn = createButton(parent,pos,tag,labelText,cbArgs)
153 
+    btn = uicontrol(parent,'Position',pos,'String',labelText,'tag',tag);
154 
+     set(btn,'Callback',{@cbParseVariable,cbArgs});
155 
+%     set(btn,'BackgroundColor','b');
156 
+end
157 
+
158 
+function txt = createTextField(parent,pos,model)
159 
+    txt = uicontrol(parent,'Style','edit','String',model,'Position',pos);
160 
+    set(txt,'BackgroundColor','w');
161 
+end
162 
+
163 
+function drpField = createDropDown(parent,pos,selectionModel)
164 
+ drpField = uicontrol(parent,'Style','popupmenu','Position',pos);
165 
+  set(drpField,'String',selectionModel.Strings);
166 
+  set(drpField,'BackgroundColor','w');
167 
+end
private/project_UI.m
Zeige Datei @ 0d4f7cd
... ... 
@@ -0,0 +1,43 @@
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+function project_UI(args)
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+    PROJECTPATH = 'projects';
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+
4 
+    frameWidth=450;
5 
+    frameHeight=50;
6 
+    model.frame = figure('Visible','off','Position',[0,0,frameWidth,frameHeight]);
7 
+    movegui(model.frame,'west'); % get this thing visible on smaller displays.
8 
+
9 
+    set(model.frame,'Name','SVM CrossVal Decode Performance 4 SPM, Projectchooser');
10 
+    set(model.frame,'NumberTitle','off');
11 
+    set(model.frame,'MenuBar','none');
12 
+    set(model.frame,'Color',get(0,'defaultUicontrolBackgroundColor'));
13 
+    set(model.frame,'Resize','off');
14 
+    set(model.frame,'Units','normalize');
15 
+
16 
+    newProjectMenu = uimenu(model.frame,'Label','Define New Project');
17 
+    set(newProjectMenu,'Enable','off');
18 
+
19 
+    d = dir(fullfile(PROJECTPATH,'*.m'));
20 
+
21 
+    model.projectSelection = uicontrol(model.frame,'Style','popupmenu',...
22 
+                    'String',{d.name},...
23 
+                    'Value',1,...  % default selected item
24 
+                    'Position',[0.33*frameWidth 40 0.66*frameWidth 20]);
25 
+    set(model.projectSelection,'BackgroundColor','w');
26 
+
27 
+
28 
+    btnSelectButton = uicontrol(model.frame,'Tag','select','String','continue','Position',[2 0  frameWidth 20]);
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+
30 
+%    model.projectSelector =
31 
+
32 
+	model.val = 1;
33 
+
34 
+    set(btnSelectButton,'Callback',{@cbChooseProject,model}); % set here, because of model.
35 
+    set(model.frame,'Visible','on');
36 
+end
37 
+
38 
+function cbChooseProject(src,evnts,args)
39 
+
40 
+	spm_SVMCrossVal(args);
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+	display(args);
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+	close(args.frame)
43 
+end
projects/Choice24.m
Zeige Datei @ 0d4f7cd
... ... 
@@ -0,0 +1,145 @@
1 
+this = struct;
2 
+
3 
+this.ID                      = 'Choice24';
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+this.base_path               = fullfile('D:','Analyze','Choice','24pilot');
5 
+
6 
+this.default.selectedSubject = 1;
7 
+this.default.smoothed        = 1;
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+this.default.multisubject    = 'single';
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+this.default.pststart        = -15;
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+this.default.pstend          = 40;
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+this.default.baselinestart   = -3;
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+this.default.baselineend     = -1;
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+this.default.frameshiftstart = -1;
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+this.default.frameshiftend   = 35;
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+this.default.frameshiftdur   = 1;
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+
17 
+% strings are parsed by sprintf!
18 
+this.default.classdefstring  = 'left,\t[9,11,13],\t-2 ;\nright,\t[10,12,14],\t-1;';
19 
+this.default.voxelstring     = 'SPL l,\t[ 0, 0, 0];\nSPL r,\t[ 0, 0, 0];\n';
20 
+
21 
+% this string is used directly.
22 
+this.default.svmoptstring    = '-s 0 -t 0 -v 6 -c 1';
23 
+
24 
+
25 
+% SUBJECT DEFINITIONS
26 
+this.subject{1} ='AI020';
27 
+this.subject{2} ='BD001';
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+this.subject{3} ='HG027';
29 
+this.subject{4} ='IK011';
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+this.subject{5} ='JZ006'; % Guter Proband
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+this.subject{6} ='LB001';
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+this.subject{7} ='SW007';
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+this.subject{8} ='VW005';
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+
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+this.roi_name{1}  ='SPL l'; % <-Parietalkortex links
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+this.roi_name{2}  ='SPL r'; % <-Parietalkortex rechts
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+this.roi_name{3}  ='PMd l';
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+this.roi_name{4}  ='PMd r';
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+this.roi_name{5}  ='IPSa l';
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+this.roi_name{6}  ='IPSa r';
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+this.roi_name{7}  ='SMA';
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+this.roi_name{8}  ='DLPFC';
43 
+this.roi_name{9}  ='V1 l';
44 
+this.roi_name{10} ='V1 r';
45 
+this.roi_name{11} ='M1 l'; % <-Motorischer Cortex l
46 
+this.roi_name{12} ='M1 r'; % <-Motorischer Cortex r
47 
+
48 
+
49 
+% Koordinaten aller Probanden A von den ROIS B: rois{A}(B,[x y z in mm])
50 
+this.coordinate{1}(1,:)  = [-18, -78, 53];
51 
+this.coordinate{1}(2,:)  = [12, -69, 46];
52 
+this.coordinate{1}(3,:)  = [-21, -12, 49];
53 
+this.coordinate{1}(4,:)  = [30, -12, 53];
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+this.coordinate{1}(5,:)  = [-30, -51, 39];
55 
+this.coordinate{1}(6,:)  = [ 33, -60, 49];
56 
+this.coordinate{1}(7,:)  = [ -9, 6, 46];
57 
+this.coordinate{1}(8,:)  = [-27 27 48];
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+this.coordinate{1}(9,:)  = [-6, -90, -7];
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+this.coordinate{1}(10,:) = [12, -90, -4];
60 
+this.coordinate{1}(11,:) = [-57, -24, 49];
61 
+this.coordinate{1}(12,:) = [42, -24, 60];
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+this.coordinate{2}(1,:)  = [-9, -72, 56];
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+this.coordinate{2}(2,:)  = [15, -72, 60];
64 
+this.coordinate{2}(3,:)  = [-30, -9, 53];
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+this.coordinate{2}(4,:)  = [ 30, -9, 49];
66 
+this.coordinate{2}(5,:)  = [-42 -36 39];
67 
+this.coordinate{2}(6,:)  = [30 -36 42];
68 
+this.coordinate{2}(7,:)  = [ -3, 6, 53];
69 
+this.coordinate{2}(8,:)  = [-27 30 28];
70 
+this.coordinate{2}(9,:)  = [-6, -81, -7];
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+this.coordinate{2}(10,:) = [9, -78, -7];
72 
+this.coordinate{2}(11,:) = [-51, -24, 60];
73 
+this.coordinate{2}(12,:) = [48, -21, 63];
74 
+this.coordinate{3}(1,:)  = [-15, -72, 60];
75 
+this.coordinate{3}(2,:)  = [15, -66, 63];
76 
+this.coordinate{3}(3,:)  = [-27, -12, 56];
77 
+this.coordinate{3}(4,:)  = [24 -15 53];
78 
+this.coordinate{3}(5,:)  = [-36 -36 42];
79 
+this.coordinate{3}(6,:)  = [30 -39 35];
80 
+this.coordinate{3}(7,:)  = [-9, 3, 53];
81 
+this.coordinate{3}(8,:)  = [-30 30 28];
82 
+this.coordinate{3}(9,:)  = [-3, -90, 4];
83 
+this.coordinate{3}(10,:) = [15, -99, 14];
84 
+this.coordinate{3}(11,:) = [-27, -27, 74];
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+this.coordinate{3}(12,:) = [36, -27, 70];
86 
+this.coordinate{4}(1,:)  = [-21, -69, 63];
87 
+this.coordinate{4}(2,:)  = [21, -69, 63];
88 
+this.coordinate{4}(3,:)  = [-33 -12 53];
89 
+this.coordinate{4}(4,:)  = [12 -9 60];
90 
+this.coordinate{4}(5,:)  = [-33 -35 46];
91 
+this.coordinate{4}(6,:)  = [42 -36 39];
92 
+this.coordinate{4}(7,:)  = [-3 0 49];
93 
+this.coordinate{4}(8,:)  = [-33 33 28];
94 
+this.coordinate{4}(9,:)  = [-3, -90, -7];
95 
+this.coordinate{4}(10,:) = [9, -81, -7];
96 
+this.coordinate{4}(11,:) = [-39, -27, 53];
97 
+this.coordinate{4}(12,:) = [51, -24, 60];
98 
+this.coordinate{5}(1,:)  = [-12 -66 63];
99 
+this.coordinate{5}(2,:)  = [12, -75, 60];
100 
+this.coordinate{5}(3,:)  = [-24, -12, 53];
101 
+this.coordinate{5}(4,:)  = [27, -9, 60];
102 
+this.coordinate{5}(5,:)  = [-42 -42 35];
103 
+this.coordinate{5}(6,:)  = [33 -48 35];
104 
+this.coordinate{5}(7,:)  = [ -3, 0, 49];
105 
+this.coordinate{5}(8,:)  = [-36 33 28];
106 
+this.coordinate{5}(9,:)  = [-15, -93, -4];
107 
+this.coordinate{5}(10,:) = [15, -90, 4];
108 
+this.coordinate{5}(11,:) = [-39, -33, 67];
109 
+this.coordinate{5}(12,:) = [27, -18, 74];
110 
+this.coordinate{6}(1,:)  = [-21, -69, 60];
111 
+this.coordinate{6}(2,:)  = [9, -72, 63];
112 
+this.coordinate{6}(3,:)  = [-24 -12 53];
113 
+this.coordinate{6}(4,:)  = [32 -12 56];
114 
+this.coordinate{6}(5,:)  = [-36 -39 35];
115 
+this.coordinate{6}(6,:)  = [42 -33 46];
116 
+this.coordinate{6}(7,:)  = [-6 3 49];
117 
+this.coordinate{6}(8,:)  = [-36 33 28];
118 
+this.coordinate{6}(9,:)  = [-12, -99, 0];
119 
+this.coordinate{6}(10,:) = [9, -96, -7];
120 
+this.coordinate{6}(11,:) = [-48, -27, 60];
121 
+this.coordinate{6}(12,:) = [33, -33, 60];
122 
+this.coordinate{7}(1,:)  = [-21, -60, 56];
123 
+this.coordinate{7}(2,:)  = [12, -69, 60];
124 
+this.coordinate{7}(3,:)  = [-24, -12, 49];
125 
+this.coordinate{7}(4,:)  = [24, -6, 49];
126 
+this.coordinate{7}(5,:)  = [-33 -45 46];
127 
+this.coordinate{7}(6,:)  = [30, -51, 49];
128 
+this.coordinate{7}(7,:)  = [0, 9, 42];
129 
+this.coordinate{7}(8,:)  = [-30 36 35];
130 
+this.coordinate{7}(9,:)  = [-3, -84, -4];
131 
+this.coordinate{7}(10,:) = [18, -87, -7];
132 
+this.coordinate{7}(11,:) = [-36, -30, 63];
133 
+this.coordinate{7}(12,:) = [42, -27, 60];
134 
+this.coordinate{8}(1,:)  = [-27, -63, 53];
135 
+this.coordinate{8}(2,:)  = [18, -66, 56];
136 
+this.coordinate{8}(3,:)  = [-21, -6, 56];
137 
+this.coordinate{8}(4,:)  = [27 -6 53];
138 
+this.coordinate{8}(5,:)  = [-36, -51, 49];
139 
+this.coordinate{8}(6,:)  = [45, -39, 53];
140 
+this.coordinate{8}(7,:)  = [-9, 9, 53];
141 
+this.coordinate{8}(8,:)  = [-36 24 25];
142 
+this.coordinate{8}(9,:)  = [0, -90, 4];
143 
+this.coordinate{8}(10,:) = [0, -90, 4];
144 
+this.coordinate{8}(11,:) = [-42, -27, 67];
145 
+    this.coordinate{8}(12,:) = [51, -27, 63];
spm_SVMCrossVal.m
Zeige Datei @ 0d4f7cd
... ... 
@@ -1,8 +1,7 @@
1 1 
 function spm_SVMCrossVal(varargin)
2 
-
3 2 
 switch nargin
4 3 
 case 0
5 
-	project_UI();
4 
+	project_UI;
6 5 
 case 1
7 6 
 	main_UI(varargin);
8 7 
 otherwise
... ... 
@@ -11,207 +9,7 @@ error('spm_SVMCrossVal:main','wrong nargin');
11 9 
 end
12 10 
 end
13 11
14 
-function project_UI(args)
15 
-    frameWidth=450;
16 
-    frameHeight=200;
17 
-    model.frame = figure('Visible','off','Position',[0,0,frameWidth,frameHeight]);
18 
-    movegui(model.frame,'west'); % get this thing visible on smaller displays.
19 
-
20 
-    set(model.frame,'Name','SVM CrossVal Decode Performance 4 SPM, Projectchooser');
21 
-    set(model.frame,'NumberTitle','off');
22 
-    set(model.frame,'MenuBar','none');
23 
-    set(model.frame,'Color',get(0,'defaultUicontrolBackgroundColor'));
24 
-    set(model.frame,'Resize','off');
25 
-    set(model.frame,'Units','normalize');
26 
-
27 
-    newProjectMenu = uimenu(model.frame,'Label','Define New Project');
28 
-    set(newProjectMenu,'Enable','off');
29 
-
30 
-
31 
-    btnSelectButton = uicontrol(model.frame,'Tag','select','String','continue','Position',[2 0  frameWidth 40]);
32 
-
33 
-%    model.projectSelector =
34 
-
35 
-	model.val = 1;
36 
-
37 
-    set(btnSelectButton,'Callback',{@cbChooseProject,model}); % set here, because of model.
38 
-    set(model.frame,'Visible','on');
39 
-end
40 
-
41 
-function cbChooseProject(src,evnts,args)
42 
-
43 
-	spm_SVMCrossVal(args);
44 
-	display(args);
45 
-	close(args.frame)
46 
-end
47 
-
48 
-function main_UI(args)
49 
-
50 
-
51 
-%  Initialize and hide the GUI as it is being constructed.
52 
-    frameWidth=450;
53 
-    frameHeight=600;
54 
-    frame = figure('Visible','off','Position',[0,0,frameWidth,frameHeight]);
55 
-    movegui(frame,'west'); % get this thing visible on smaller displays.
56 
-
57 
-    set(frame,'Name','SVMCrossVal Decode Performance 4 SPM');
58 
-    set(frame,'NumberTitle','off');
59 
-    set(frame,'MenuBar','none');
60 
-    set(frame,'Color',get(0,'defaultUicontrolBackgroundColor'));
61 
-    set(frame,'Resize','off');
62 
-    set(frame,'Units','normalize');
63 
-
64 
-
65 
-    savemenu = uimenu(frame,'Label','Save/Load');
66 
-
67 
-    model.subjectMap = SubjectRoiMapping;
68 
-    nElementRows = 24;
69 
-    optionLineHeight = 1.0/nElementRows;
70 
-    controlElementHeight=optionLineHeight*(1.0/1.5)*frameHeight;
71 
-    pSubject     = uipanel(frame,'Title','Subject',          'Position',[0 optionLineHeight*19 frameWidth optionLineHeight*5]);
72 
-    pPSTH        = uipanel(frame,'Title','PSTH Options',     'Position',[0 optionLineHeight*14 frameWidth optionLineHeight*5]);
73 
-    pCLASS       = uipanel(frame,'Title','Class Definitions','Position',[0 optionLineHeight*9  frameWidth optionLineHeight*5]);
74 
-    pVOXEL       = uipanel(frame,'Title','Voxel Selector',   'Position',[0 optionLineHeight*3  frameWidth optionLineHeight*6]);
75 
-    pSVM         = uipanel(frame,'Title','SVM Options',      'Position',[0 optionLineHeight*1  frameWidth optionLineHeight*2]);
76 
-    btnRunButton = uicontrol(frame,'Tag','run','String','run decode-performance visualiser','Position',[2 optionLineHeight*0  frameWidth controlElementHeight*1.6]);
77 
-
78 
-
79 
-    % Subject
80 
-    firstColumn  =  5.00;
81 
-    firstRow     =  1.00 * controlElementHeight;
82 
-
83 
-    model.subjectSelector = uicontrol(pSubject,'Style','listbox',...
84 
-                    'Min',1, 'Max',3,...
85 
-                    'String',getSubjectCellList(model.subjectMap),...
86 
-                    'Value',5,...  % default selected item
87 
-                    'Position',[firstColumn firstRow 0.66*frameWidth controlElementHeight*6]);
88 
-    set(model.subjectSelector,'BackgroundColor','w');
89 
-
90 
-    model.txtSmoothed     = createTextField(pSubject,[0.68*frameWidth firstRow  0.25*frameWidth controlElementHeight],'1');
91 
-    model.txtMultisubject = createTextField(pSubject,[0.68*frameWidth firstRow*2  0.25*frameWidth controlElementHeight],'single');
92 
-    set(model.txtMultisubject,'enable','off');
93 
-
94 
-    % PSTH
95 
-    firstColumn  = 5.00;
96 
-    secondColumn = 0.33*frameWidth;
97 
-    thirdColumn  = 0.66*frameWidth;
98 
-%     fourthColumn = 0.84*frameWidth;
99 
-
100 
-    firstRow    = 5.5*controlElementHeight;
101 
-    secondRow   = 4.5*controlElementHeight;
102 
-    thirdRow    = 3.5*controlElementHeight;
103 
-    fourthRow   = 2.5*controlElementHeight;
104 
-    fifthRow    = 1.0*controlElementHeight;
105 
-
106 
-    lStart      = createLabel(pPSTH, [secondColumn firstRow  0.33*frameWidth controlElementHeight],'Start [sec]');
107 
-    lEnd        = createLabel(pPSTH, [thirdColumn  firstRow  0.33*frameWidth controlElementHeight],'End [sec]');
108 
-    lPSTH       = createLabel(pPSTH, [firstColumn  secondRow 0.33*frameWidth controlElementHeight],'PSTH Range');
109 
-    lBaseline   = createLabel(pPSTH, [firstColumn  thirdRow  0.33*frameWidth controlElementHeight],'Baseline');
110 
-    lFrameShift = createLabel(pPSTH, [firstColumn  fourthRow 0.33*frameWidth controlElementHeight],'SVM Frame Shift');
111 
-    lFramsSize  = createLabel(pPSTH, [firstColumn  fifthRow  0.33*frameWidth controlElementHeight],'SVM Frame Size');
112 
-
113 
-
114 
-    model.txtPSTHStart       = createTextField(pPSTH,[secondColumn secondRow 0.25*frameWidth controlElementHeight],'-10.0');
115 
-    model.txtPSTHEnd         = createTextField(pPSTH,[thirdColumn  secondRow 0.25*frameWidth controlElementHeight],' 40.0');
116 
-    model.txtBaselineStart   = createTextField(pPSTH,[secondColumn thirdRow  0.25*frameWidth controlElementHeight],'-3.0');
117 
-    model.txtBaselineEnd     = createTextField(pPSTH,[thirdColumn  thirdRow  0.25*frameWidth controlElementHeight],'-1.0');
118 
-    model.txtFrameShiftStart = createTextField(pPSTH,[secondColumn fourthRow 0.25*frameWidth controlElementHeight],'-5.0');
119 
-    model.txtFrameShiftEnd   = createTextField(pPSTH,[thirdColumn  fourthRow 0.25*frameWidth controlElementHeight],' 35.0');
120 
-    model.txtFrameShiftDur   = createTextField(pPSTH,[secondColumn fifthRow  0.25*frameWidth controlElementHeight],' 0');
121 
-
122 12
123 
-    %Classes
124 
-    nClassRows = 6;
125 
-    firstColumn  = 5.00;
126 
-
127 
-    firstRow    = (nClassRows-0.5)*controlElementHeight;
128 
-    secondRow   = (nClassRows-4.5)*controlElementHeight;
129 
-
130 
-    lClassDef = createLabel(pCLASS, [firstColumn firstRow  0.66*frameWidth controlElementHeight],'<Label>,<[Event,Event,..]>,<SVM-Value>;');
131 
-    model.txtClassDef = createTextField(pCLASS,[firstColumn secondRow 0.98*frameWidth 4*controlElementHeight],sprintf('DRT,\t[9,10],\t-2 ;\nM2ST,\t[11,12],\t-1;'));
132 
-    set(model.txtClassDef,'HorizontalAlignment','left');
133 
-    set(model.txtClassDef,'Max',20);
134 
-    set(model.txtClassDef,'Min',0);
135 
-    set(model.txtClassDef, 'FontName', 'FixedWidth')
136 
-
137 
-    %Voxel
138 
-    nVoxelRows = 8;
139 
-    firstColumn  = 5.00;
140 
-
141 
-    firstRow    = (nVoxelRows-0.5)*controlElementHeight;
142 
-    secondRow   = (nVoxelRows-7.5)*controlElementHeight;
143 
-
144 
-    lVoxelDef = createLabel(pVOXEL, [firstColumn firstRow  0.66*frameWidth controlElementHeight],'<ROI Name>,<ROI Modifier>;');
145 
-    model.txtVoxelDef = createTextField(pVOXEL,[firstColumn secondRow 0.98*frameWidth 6*controlElementHeight],...
146 
-        sprintf('SPL l,\t[ 0, 0, 0];\nSPL r,\t[ 0, 0, 0];\n'));
147 
-    set(model.txtVoxelDef,'HorizontalAlignment','left');
148 
-    set(model.txtVoxelDef,'Max',20);
149 
-    set(model.txtVoxelDef,'Min',0);
150 
-    set(model.txtVoxelDef, 'FontName', 'FixedWidth')
151 
-
152 
-    % SVM
153 
-    firstColumn  =  5.00;
154 
-    firstRow     =  1.00 * controlElementHeight;
155 
-
156 
-    model.txtSVMopts = createTextField(pSVM,[firstColumn firstRow  0.66*frameWidth controlElementHeight],'-s 0 -t 0 -v 6 -c 1');
157 
-    %model.txtSVMopts = createTextField(pSVM,[firstColumn firstRow  0.66*frameWidth controlElementHeight],'-s 0 -t 2 -v 6 -c 10 -g .1');
158 
-    set(model.txtSVMopts,'Enable','on'); %inactive
159 
-    set(model.txtSVMopts,'HorizontalAlignment','left');
160 
-
161 
-    set(btnRunButton,'Callback',{@cbRunSVM,model}); % set here, because of model.
162 
-    uimenu(savemenu,'Label','Save','Callback',{@mcb_save,model});
163 
-    uimenu(savemenu,'Label','Load','Callback',{@mcb_load,model});
164 
-
165 
-    set(frame,'Visible','on');
166 
-end
167 
-
168 
-function mcb_save(src,event,model)
169 
-display('SAVE');
170 
-
171 
-end
172 
-
173 
-function mcb_load(src,event,model)
174 
-display('LOAD');
175 
-end
176 
-
177 
-function sane = isSane(model)
178 
-% TODO
179 
-sane = 1;
180 
-end
181 
-
182 
-function cbRunSVM(src,evnt,model)
183 
-    display('RUN');
184 
-    if isSane(model)
185 
-        classify(model)
186 
-    else
187 
-        error('spmtoolbox:SVMCrossVal:paramcheck','please verify all parameters');
188 
-    end
189 
-end
190 
-
191 
-
192 
-function label = createLabel(parent,  pos, labelText)
193 
-    label = uicontrol(parent,'Style','text','String',labelText,'Position',pos);
194 
-    set(label,'HorizontalAlignment','left');
195 
-    set(label,'Units','characters');
196 
-%     set(label,'BackgroundColor','r');
197 
-end
198 
-
199 
-function btn = createButton(parent,pos,tag,labelText,cbArgs)
200 
-    btn = uicontrol(parent,'Position',pos,'String',labelText,'tag',tag);
201 
-     set(btn,'Callback',{@cbParseVariable,cbArgs});
202 
-%     set(btn,'BackgroundColor','b');
203 
-end
204 
-
205 
-function txt = createTextField(parent,pos,model)
206 
-    txt = uicontrol(parent,'Style','edit','String',model,'Position',pos);
207 
-    set(txt,'BackgroundColor','w');
208 
-end
209 
-
210 
-function drpField = createDropDown(parent,pos,selectionModel)
211 
- drpField = uicontrol(parent,'Style','popupmenu','Position',pos);
212 
-  set(drpField,'String',selectionModel.Strings);
213 
-  set(drpField,'BackgroundColor','w');
214 
-end
215 13
216 14
217 15
218 16