SVMCrossVal.git

@@ -12,7 +12,8 @@ DEFAULT.frameshiftend   = 35;

 DEFAULT.frameshiftdur   = 0;

 DEFAULT.classdefstring  = 'left,\t[9,11,13]\nright,\t[10,12,14]';

 DEFAULT.voxelstring     = 'SPL l + [ 0, 0, 0] \nSPL r + [ 0, 0, 0]\n';

-DEFAULT.svmoptstring    = '-s 0 -t 0 -v 6 -c 1';

+DEFAULT.svmoptstring    = '-s 0 -t 0 -c 1';

+DEFAULT.svmnfold        = '6';

 DEFAULT.searchlightradius = 3;

 %  Initialize and hide the GUI as it is being constructed.

@@ -25,10 +26,10 @@ DEFAULT.searchlightradius = 3;

     set(frame,'NumberTitle','off');

     set(frame,'MenuBar','none');

     set(frame,'Color',get(0,'defaultUicontrolBackgroundColor'));

-    set(frame,'Resize','off');

+    set(frame,'Resize','on');

     set(frame,'Units','normalized');

-    pFirstStep   = uipanel(frame,'Title','Preprocessing','Position',[0 0.4 1 0.6]);

+    pFirstStep   = uipanel(frame,'Title','Preprocessing','Position',[0 0.3 1 0.7]);

     set(pFirstStep,'BackgroundColor','w');

     set(pFirstStep,'Units','normalized');

@@ -37,43 +38,81 @@ DEFAULT.searchlightradius = 3;

     assignin('base','model',model);

     %Classification Step

-    secondStepBaseColor = [0.7 0.7 0.0 ];

-    pSecondStep = uipanel(frame,'Title','Classification','Position',[0 0 1 0.4]);

+    secondStepBaseColor = 'w';

+    pSecondStep = uipanel(frame,'Title','Classification','Position',[0 0 1 0.3]);

     set(pSecondStep,'BackgroundColor',secondStepBaseColor);

-    model2 = createSecondStepPanel(pSecondStep,DEFAULT,secondStepBaseColor);

+    model2 = createSecondStepPanel(pSecondStep,DEFAULT,model,secondStepBaseColor);

     assignin('base','model2',model2);

     set(frame,'Visible','on');

 end

-function model = createSecondStepPanel(parent,DEFAULT,basecolor)

-pSVM = uipanel(parent,'Units','normalized','Position',[0 0 0.5 0.9]);

+function model = createSecondStepPanel(parent,DEFAULT,model1,basecolor)

+    

+pSVM = uipanel(parent,'Units','normalized','Position',[0 0.0 0.5 1]);

     set(pSVM,'Title','SVM Classification');

     set(pSVM,'BackgroundColor',basecolor);

-    model.txtSVMopts = createTextField(pSVM,[0 0.9 1 0.1],DEFAULT.svmoptstring);

-    set(model.txtSVMopts,'Enable','on'); %inactive

+    model.txtSVMopts = createTextField(pSVM,[0 0.75 1 0.25],DEFAULT.svmoptstring);

     set(model.txtSVMopts,'HorizontalAlignment','left');

+    model.txtSVMnfold = createTextField(pSVM,[0.0 0.50 0.5 0.25],DEFAULT.svmnfold);

+    createLabel(pSVM,[0.5 0.50 0.5 0.25 ],'-Fold CrossVal');

+

+

-pSOM = uipanel(parent,'Units','normalized','Position',[0.5 0 0.5 0.9]);

-    set(pSOM,'Title','SVM Classification');

+pSOM = uipanel(parent,'Units','normalized','Position',[0.5 0.0 0.5 1]);

+    set(pSOM,'Title','SOM Classification');

     set(pSOM,'BackgroundColor',basecolor);

+

+    model.txtSOMopts = createTextField(pSOM,[0 0.75 1 0.25],'4x3 rect');

+    set(model.txtSOMopts,'HorizontalAlignment','left');

+        set(model.txtSOMopts,'Enable','off');

+

+    model.txtSOMnfold = createTextField(pSOM,[0.0 0.50 0.5 0.25],DEFAULT.svmnfold);

+        set(model.txtSOMnfold,'Enable','off');

+    createLabel(pSOM,[0.5 0.50 0.5 0.25 ],'-Fold CrossVal');

+

+

+    

+    

+    btnRunSVM = uicontrol(pSVM,'String','run SVM Crossvalidation',...

+        'Units','normalized',...

+        'Position',[0 0.25 1 0.25]);

+    set(btnRunSVM,'Callback',{@cbRunSVM,model1,model}); % set here, because of model.

+    

+    btnRunXSVM = uicontrol(pSVM,'String','run SVM X-Subject validation',...

+        'Units','normalized',...

+        'Position',[0 0.0 1 0.25]);

+    set(btnRunXSVM,'Callback',{@cbRunXSVM,model1,model}); % set here, because of model.

+    set(btnRunXSVM,'Enable','off');

+    

+    btnRunSOM = uicontrol(pSOM,'String','run SOM Crossvalidation',...

+        'Units','normalized',...

+    'Position',[0.0 0.25 1 0.25]);

+    set(btnRunSOM,'Callback',{@cbRunSOM,model1,model}); % set here, because of model.

+    set(btnRunSOM,'Enable','off');

+

+    btnRunXSOM = uicontrol(pSOM,'String','run SOM X-Subject validation',...

+        'Units','normalized',...

+        'Position',[0.0 0.0 1 0.25]);

+    set(btnRunXSOM,'Callback',{@cbRunXSOM,model1,model}); % set here, because of model.

+    set(btnRunXSOM,'Enable','off');

 end

 function model = createFirstStepPanel(parent,DEFAULT)

-    x1 = 0;

-    x2 = 0.4;

-    x3 = 1;

+    main_grid = cell(2,4);

+    main_grid{1,1} = [0 0.7 0.4 0.3];

+    main_grid{1,2} = [0 0.5 0.5 0.2];

+    main_grid{1,3} = [0 0.1 0.5 0.4];

+    main_grid{1,4} = [0 0.0 1.0 0.1];

-    y1 = 1;

-    y2 = 0.6;

-    y3 = 0.4;

-    y4 = 0.2;

-    y5 = 0;

+    main_grid{2,1} = [0.4 0.7 0.6 0.3];

+    main_grid{2,2} = [0.5 0.5 0.5 0.2];

+    main_grid{2,3} = [0.5 0.1 0.5 0.4];

     %Subjects

     subjectList = {'Subj1','Subj2','Subj3','Subj4'};

@@ -82,11 +121,11 @@ function model = createFirstStepPanel(parent,DEFAULT)

                     'String',subjectList,...

                     'UserData',subjectList,...

                     'Units','normalized',...

-                    'Position',[x1 y2 x2-x1 y1-y2]);

-    set(model.subjectSelector,'BackgroundColor','y');

+                    'Position',cell2mat(main_grid(1,1)));

+    set(model.subjectSelector,'BackgroundColor','w');

     %Classes

-    pClasses = uipanel(parent,'Units','normalized','Position',[x1 y3 0.5 0.2]);

+    pClasses = uipanel(parent,'Units','normalized','Position',cell2mat(main_grid(1,2)));

     set(pClasses,'Title','Class Definitions');

     set(pClasses,'BackgroundColor','w');

         lClassDef = uicontrol(pClasses,...

@@ -105,11 +144,11 @@ function model = createFirstStepPanel(parent,DEFAULT)

         set(model.txtClassDef,'Max',20);

         set(model.txtClassDef,'Min',0);

         set(model.txtClassDef, 'FontName', 'FixedWidth');

-        set(model.txtClassDef, 'BackgroundColor', 'y');

+        set(model.txtClassDef, 'BackgroundColor', 'w');

     %Timeline

-    pPSTH        = uipanel(parent,'Title','PSTH Options','Position',[0.5 y2 0.5 y1-y2]);

+    pPSTH        = uipanel(parent,'Title','PSTH Options','Position',cell2mat(main_grid(2,1)));

     set(pPSTH,'BackgroundColor','w');

         grid_h = 0.16;

@@ -159,7 +198,7 @@ function model = createFirstStepPanel(parent,DEFAULT)

         model.txtSearchlightRadius = createTextField(pPSTH,cell2mat(grid(2,6)),DEFAULT.searchlightradius);

         % images

-        pImage = uipanel(parent,'Title','Image Options','Position',[0.5 0.4 0.5 0.2]);

+        pImage = uipanel(parent,'Title','Image Options','Position',cell2mat(main_grid(2,2)));

         set(pImage,'BackgroundColor','w');

         createLabel(pImage,[0.0 0.5 1 0.5],'Select Image Base');

@@ -175,7 +214,7 @@ function model = createFirstStepPanel(parent,DEFAULT)

         % coordinate Table

-        pVoxel = uipanel(parent,'Title','ROI','Position',[0.0 0.0 0.5 0.4]);

+        pVoxel = uipanel(parent,'Title','ROI','Position',cell2mat(main_grid(1,3)));

         set(pVoxel,'BackgroundColor','w');

         lVoxelDef = createLabel(pVoxel, [0 0.9 1 0.1],'<ROI Name>+[offset];');

         model.txtVoxelDef = createTextField(pVoxel,[0 0 1 0.9],...

@@ -185,30 +224,61 @@ function model = createFirstStepPanel(parent,DEFAULT)

         set(model.txtVoxelDef,'Min',0);

         set(model.txtVoxelDef, 'FontName', 'FixedWidth');

-        pButtons = uipanel(parent,'Position',[0.5 0.0 0.5 0.4]);

-        set(pButtons,'BackgroundColor','b');

+        %normalizations

+        pNorm = uipanel(parent,'Title','Normalization','Position',cell2mat(main_grid(2,3)));

+        set(pNorm,'BackgroundColor','w');

+        

+        createLabel(pNorm,[0 0.75 1 0.25],'PST Normalization');

+        norm1Model = {'norm A','norm B'};

+        model.selNormPST = uicontrol(pNorm,'Style','popupmenu',...

+            'Units','normalized',...

+            'Position',[0.0 0.5 1 0.25],...

+            'String',norm1Model,...

+            'UserData',norm1Model,...

+            'Value',1);

+         set(model.selNormPST,'BackgroundColor','w');   

+        

+        createLabel(pNorm,[0 0.25 1 0.25],'Class-Grouping Normalization');

+        norm2Model = {'norm X','norm Y'};

+        model.selNormClass = uicontrol(pNorm,'Style','popupmenu',...

+            'Units','normalized',...

+            'Position',[0.0 0.0 1 0.25],...

+            'String',norm2Model,...

+            'UserData',norm2Model,...

+            'Value',1);

+         set(model.selNormClass,'BackgroundColor','w');   

+        

+        %buttons

+        pButtons = uipanel(parent,'Position',cell2mat(main_grid(1,4)));

+        set(pButtons,'BackgroundColor','w');

-        btnRunButton1 = uicontrol(pButtons,'String','run coord-Table','Units','normalized','Position',[0 0.75 1 0.2]);

+        btnRunButton1 = uicontrol(pButtons,'String','run coord-Table',...

+            'Units','normalized','Position',[0 0 0.33 1]);

         set(btnRunButton1,'Callback',{@cbRunCoordTable,model}); % set here, because of model.    

-        btnRunButton2 = uicontrol(pButtons,'String','run full Brain Searchlight','Units','normalized','Position',[0 0.5 1 0.2]);

+        btnRunButton2 = uicontrol(pButtons,'String','run full Brain Searchlight',...

+            'Units','normalized','Position',[0.33 0 0.33 1]);

         set(btnRunButton2,'Callback',{@cbRunFBS,model}); % set here, because of model.    

-        btnRunButton3 = uicontrol(pButtons,'String','run ROI-Image processing','Units','normalized','Position',[0 0.25 1 0.2]);

+        btnRunButton3 = uicontrol(pButtons,'String','run ROI-Image processing',...

+            'Units','normalized','Position',[0.66 0 0.33 1]);

         set(btnRunButton2,'Callback',{@cbRunROIImage,model}); % set here, because of model.    

         set(btnRunButton3,'Enable','off');

 end

 function cbRunCoordTable(src,evnt,model)

     display('RUN Coord-Table Mode');

+    assignin('base','model1',model);

     main('COORD-LOOKUP-TABLE',model);

 end

 function cbRunROIImage(src,evnt,model)

     display('RUN Image-Mask Mode');

+    assignin('base','model1',model);

     main('ROI-IMAGE-MASK', model);

 end

 function cbRunFBS(src,evnt,model)

     display('RUN Full Brain Searchlight Mode');

+    assignin('base','model1',model);

     display('not implemented.');

 end

@@ -220,7 +290,8 @@ function label = createLabel(parent,  pos, labelText)

 end

 function txt = createTextField(parent,pos,model)

-    textfieldcolor = [0.9 0.9 0.0];

+%     textfieldcolor = [0.9 0.9 0.0];

+    textfieldcolor = 'w';

     txt = uicontrol(parent,'Style','edit','Units','normalized','String',model,'Position',pos);

     set(txt,'BackgroundColor',textfieldcolor);

 end