SVMCrossVal.git

@@ -0,0 +1,5 @@

+function scell = getSubjectCellList(model)

+list = get(model.subjectSelector,'UserData');

+sel = get(model.subjectSelector,'Value');

+scell = list(sel);

+end

\ No newline at end of file

@@ -0,0 +1,11 @@

+% generate parameter structs for subroutines

+function timelineParams = getTimeLineParams(paramModel)

+timelineParams = struct;

+timelineParams.frameShiftStart = getDouble(paramModel.txtFrameShiftStart);  % -20;

+timelineParams.frameShiftEnd   = getDouble(paramModel.txtFrameShiftEnd); %15;

+timelineParams.decodeDuration  = getDouble(paramModel.txtFrameShiftDur);

+timelineParams.psthStart       = getDouble(paramModel.txtPSTHStart); % -25;

+timelineParams.psthEnd         = getDouble(paramModel.txtPSTHEnd); % 20;

+timelineParams.baselineStart   = getDouble(paramModel.txtBaselineStart); % -22;

+timelineParams.baselineEnd     = getDouble(paramModel.txtBaselineEnd); % -20;

+end

@@ -15,18 +15,6 @@ end

-% generate parameter structs for subroutines

-function timelineParams = getTimeLineParams(paramModel)

-timelineParams = struct;

-timelineParams.frameShiftStart = getDouble(paramModel.txtFrameShiftStart);  % -20;

-timelineParams.frameShiftEnd   = getDouble(paramModel.txtFrameShiftEnd); %15;

-timelineParams.decodeDuration  = getDouble(paramModel.txtFrameShiftDur);

-timelineParams.psthStart       = getDouble(paramModel.txtPSTHStart); % -25;

-timelineParams.psthEnd         = getDouble(paramModel.txtPSTHEnd); % 20;

-timelineParams.baselineStart   = getDouble(paramModel.txtBaselineStart); % -22;

-timelineParams.baselineEnd     = getDouble(paramModel.txtBaselineEnd); % -20;

-

-end

@@ -1,7 +1,4 @@

-function runROIImageMaskMode(timeline,parameterModel)

-        loadParams.StudyID = 'CHOICE24';

-        loadParams.use_smoothed_image_hack = 1;

-        loadParams.subjectCellArray = getSubjectIDString(parameterModel);

+function runROIImageMaskMode(subjects,timeline)

         imageStruct = loadImageFileNamesData(loadParams);

         assignin('base','imageStruct',imageStruct);

@@ -0,0 +1,12 @@

+% generate parameter structs for subroutines

+function model = setTimeLineParams(model,paramStruct)

+

+set(model.txtFrameShiftStart,'String',num2str(paramStruct.frameShiftStart)) ;  

+set(model.txtFrameShiftEnd,'String',num2str(paramStruct.frameShiftEnd)) ; 

+set(model.txtFrameShiftDur,'String',num2str(paramStruct.decodeDuration)) ; 

+set(model.txtPSTHStart,'String',num2str(paramStruct.psthStart)) ;  

+set(model.txtPSTHEnd,'String',num2str(paramStruct.psthEnd)) ;

+set(model.txtBaselineStart,'String',num2str(paramStruct.baselineStart)) ; 

+set(model.txtBaselineEnd,'String',num2str(paramStruct.baselineEnd)) ; 

+

+end

@@ -49,15 +49,38 @@ DEFAULT.wd  = fullfile('d:','Analyze','Choice','24pilot');

     model = createSecondStepPanel(model,pSecondStep,DEFAULT,secondStepBaseColor);

+    savemenu = uimenu(frame,'Label','Save/Load');

+    uimenu(savemenu,'Label','Save','Callback',{@mcb_save,model});

+    uimenu(savemenu,'Label','Load','Callback',{@mcb_load,model});

+    

     set(frame,'Visible','on');

     % fill with data

     model = scanDirs(model);

     assignin('base','model',model);

+end

+function mcb_save(src,evnt,model)

+disp('SAVE');

+baseDir  = model.baseDir;

+timeLine = getTimeLineParams(model);

+subjects = getSubjectCellList(model);

+% classDef

+% images

+% normalization

+[file path] = uiputfile('*.mat','Save current Params ...',model.baseDir);

+save( fullfile(path,file),'baseDir','timeLine','subjects') ;

 end

+function model = mcb_load(src,evnt,model)

+disp('LOAD');

+[file path] = uigetfile('*.mat','Save current Params ...',model.baseDir);

+l = load(fullfile(path,file));

+model = setTimeLineParams(model,l.timeLine);

+end

+

+

 function model = cbSetBaseDir(model,newDir)

 model.baseDir = newDir;

 end

@@ -273,6 +296,7 @@ function model = createFirstStepPanel(model,parent,DEFAULT)

         btnRunButton1 = uicontrol(pButtons,'String','run coord-Table',...

             'Units','normalized','Position',[0 0 0.33 1]);

         set(btnRunButton1,'Callback',{@cbRunCoordTable,model}); % set here, because of model.    

+        set(btnRunButton1,'Enable','off');

         btnRunButton2 = uicontrol(pButtons,'String','run full Brain Searchlight',...

             'Units','normalized','Position',[0.33 0 0.33 1]);

@@ -281,10 +305,33 @@ function model = createFirstStepPanel(model,parent,DEFAULT)

         btnRunButton3 = uicontrol(pButtons,'String','run ROI-Image processing',...

             'Units','normalized','Position',[0.66 0 0.33 1]);

-        set(btnRunButton2,'Callback',{@cbRunROIImage,model}); % set here, because of model.    

-        set(btnRunButton3,'Enable','off');

+        set(btnRunButton3,'Callback',{@cbRunPreprocessing,model,'ROI'}); % set here, because of model.    

+        set(btnRunButton3,'Enable','on');

+        

+        assignin('base','model',model);

 end

+function cbRunPreprocessing(src,evnt,model,task)

+

+% parse the GUI and pass parameters as structure

+disp('RUN');

+timeLine = getTimeLineParams(model);

+subjects = getSubjectCellList(model);

+% classDef

+% images

+% normalization

+

+switch task

+    case 'COORD'

+        coordinates=3

+    case 'ROI'

+        disp('ROI');

+        runROIImageMaskMode(subjects,timeLine)

+    case 'FBS'

+end

+end

+

+

 function cbRunCoordTable(src,evnt,model)

     display('RUN Coord-Table Mode');

     main('COORD-LOOKUP-TABLE',model);