SVMCrossVal.git

added TR
Parent 0c4a44f
Christoph Budziszewski

Christoph Budziszewski commited on 2009-04-16 17:00:50
Zeige 4 geänderte Dateien mit 14 Einfügungen und 6 Löschungen. 

git-svn-id: https://svn.discofish.de/MATLAB/spmtoolbox/SVMCrossVal@176 83ab2cfd-5345-466c-8aeb-2b2739fb922d
private/calculatePST.m
Zeige Datei @ f625db4
... ... 
@@ -11,14 +11,14 @@ function pst = calculatePST(timeline,pstopts,data)
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     edur            = 12;
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     pre             = timeline.psthStart;
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     post            = timeline.psthEnd;
14 
-    res             = 1;
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+    tr              = timeline.tr;
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+    res             = tr * timeline.trFactor;
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     normz           = 'file';
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     pm              = 0;
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     lsess           = getNumberOfScans(des);
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     nSessions       = getNumberOfSessions(des);
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-    tr              = 2;
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     [evntrow evntcol]=size(eventList);
24 24
private/getTimeLineParams.m
Zeige Datei @ f625db4
... ... 
@@ -8,4 +8,6 @@ timelineParams.psthStart       = getDouble(paramModel.txtPSTHStart); % -25;
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 timelineParams.psthEnd         = getDouble(paramModel.txtPSTHEnd); % 20;
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 timelineParams.baselineStart   = getDouble(paramModel.txtBaselineStart); % -22;
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 timelineParams.baselineEnd     = getDouble(paramModel.txtBaselineEnd); % -20;
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+timelineParams.tr              = 2;
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+timelineParams.trFactor        = getDouble(paramModel.txtTrFactor);
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 end
private/scanDirs.m
Zeige Datei @ f625db4
... ... 
@@ -14,4 +14,7 @@ set(model.imageTypeSelection,'UserData',imageMask);
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 set(model.txtBaseDir,'String',model.baseDir);
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+% des =
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+% tr = des.xsDes.Interscan_interval(1:end-3);
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+set(model.labelTR,'String',2)
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 end
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\ No newline at end of file
private/ui_main.m
Zeige Datei @ f625db4
... ... 
@@ -6,6 +6,7 @@ DEFAULT.pststart        = -15;
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 DEFAULT.pstend          = 40;
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 DEFAULT.baselinestart   = -3;
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 DEFAULT.baselineend     = -1;
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+DEFAULT.trfactor        = 0.5;
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 DEFAULT.frameshiftstart = -5;
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 DEFAULT.frameshiftend   = 35;
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 DEFAULT.frameshiftdur   = 0;
... ... 
@@ -187,9 +188,9 @@ function model = createFirstStepPanel(model,parent,DEFAULT)
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         tl_grid{2,4} = [0.4 0.33 grid_w grid_h];
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         tl_grid{3,4} = [0.7 0.33 grid_w grid_h];
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-        tl_grid{1,5} = [0.0 0.16 0.5 grid_h];
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-        tl_grid{2,5} = [0.5 0.16 grid_w grid_h];
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-        tl_grid{3,5} = [0.75 0.16 grid_w grid_h];
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+        tl_grid{1,5} = [0.0 0.16 grid_w grid_h];
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+        tl_grid{2,5} = [0.4 0.16 grid_w grid_h];
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+        tl_grid{3,5} = [0.7 0.16 grid_w grid_h];
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         tl_grid{1,6} = [0.0 0.0 0.5 grid_h];
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         tl_grid{2,6} = [0.5 0.0 grid_w grid_h];
... ... 
@@ -199,12 +200,14 @@ function model = createFirstStepPanel(model,parent,DEFAULT)
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         lEnd        = createLabel(pPSTH, cell2mat(tl_grid(3,1)) ,'End [sec]');
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         lPSTH       = createLabel(pPSTH, cell2mat(tl_grid(1,2)),'PSTH Range');
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         lBaseline   = createLabel(pPSTH, cell2mat(tl_grid(1,3)),'Baseline');
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+        lTRF        = createLabel(pPSTH, cell2mat(tl_grid(1,5)),'TR Factor');
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         model.txtPSTHStart         = createTextField(pPSTH,cell2mat(tl_grid(2,2)),DEFAULT.pststart);
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         model.txtPSTHEnd           = createTextField(pPSTH,cell2mat(tl_grid(3,2)),DEFAULT.pstend);
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         model.txtBaselineStart     = createTextField(pPSTH,cell2mat(tl_grid(2,3)),DEFAULT.baselinestart);
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         model.txtBaselineEnd       = createTextField(pPSTH,cell2mat(tl_grid(3,3)),DEFAULT.baselineend);
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-
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+        model.txtTrFactor          = createTextField(pPSTH,cell2mat(tl_grid(2,5)),DEFAULT.trfactor);
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+        model.labelTR              = createTextField(pPSTH, cell2mat(tl_grid(3,5)),'');
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         % images
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         pImage = uipanel(parent,'Title','Image Options','Position',cell2mat(main_grid(2,2)));
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