function varargout=som_select(c_vect,plane_h,arg) %SOM_SELECT Manual selection of map units from a visualization. % % som_select(c_vect,[plane_h]) % % som_select(3) % som_select(sM.labels(:,1)) % % Input arguments ([]'s are optional): % c_vect (scalar) number of classes % (vector) initial class identifiers % (cell array) of strings, class names % (matrix) size * x 3, the color of each class % [plane_h] (scalar) handle of the plane (axes) to be marked. % By default, the current axes is used (GCA). % For the function to work, the plot in the % axes must have been created with the % SOM_CPLANE function (or SOM_SHOW). % % Launches a GUI which allows user to select nodes from plane by % clicking them or by choosing a region (a polygon). % % Middle mouse button: selects (or clears selection of) a single node % Left mouse button: lets user draw a polygon % Right mouse button: selects (or clears selection of) the units % inside the polygon % % From the GUI, the color (class) is selected as well as whether % but buttons select or clear the selection from the units. The % buttons on the bottom have the following actions: % % 'OK' Assigns the class identifiers to the 'ans' variable in % workspace. The value is an array of class identifiers: % strings (cellstr) if the c_vect was an array of % strings, a vector otherwise. % 'Clear' Removes marks from the plane. % 'Close' Closes the application. % % See also SOM_SHOW, SOM_CPLANE. % Contributed to SOM Toolbox vs2, February 2nd, 2000 by Juha Parhankangas % Copyright (c) by Juha Parhankangas % http://www.cis.hut.fi/projects/somtoolbox/ % Juha Parhankangas 050100, juuso 010200 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %% input arguments if nargin < 2, plane_h = gca; end if(isempty(gcbo)), arg='start'; end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %% action switch arg case 'start' patch_h=find_patch(plane_h); lattice=getfield(size(get(patch_h,'XData')),{1}); msize(1)=floor(getfield(get(plane_h,'YLim'),{2})); msize(2)=floor(getfield(get(plane_h,'XLim'),{2})-0.5); if lattice==6 lattice='hexa'; else lattice='rect'; end if any(strcmp(get(patch_h,'Tag'),{'planeBar','planePie'})) tmp_dim=size(get(patch_h,'XData'),2)/prod(msize); tmp_xdata=get(patch_h,'XData'); tmp_x=tmp_xdata(:,(msize(1)*(msize(2)-1)+2)*tmp_dim); if floor(tmp_x(1)) ~= round(tmp_x(1)) lattice = 'hexa'; else lattice = 'rect'; end elseif strcmp(get(patch_h,'Tag'),'planePlot') tmp_lines_h=get(gca,'Children'); test_x=mean(get(tmp_lines_h(2),'XData')); if round(test_x) ~= floor(test_x) lattice = 'hexa'; else lattice = 'rect'; end form=0.5*vis_patch('hexa'); l = size(form,1); nx = repmat(form(:,1),1,prod(msize)); ny = repmat(form(:,2),1,prod(msize)); x=reshape(repmat(1:msize(2),l*msize(1),1),l,prod(msize)); y=repmat(repmat(1:msize(1),l,1),1,msize(2)); if strcmp(lattice,'hexa') t = find(~rem(y(1,:),2)); x(:,t)=x(:,t)+.5; end x=x+nx; y=y+ny; colors=reshape(ones(prod(msize),1)*[NaN NaN NaN],... [1 prod(msize) 3]); v=caxis; patch_h=patch(x,y,colors,... 'EdgeColor','none',... 'ButtonDownFcn',... 'som_select([],[],''click'')',... 'Tag','planePlot'); set([gca gcf],'ButtonDownFcn','som_select([],[],''click'')'); caxis(v) end c_colors = []; if iscell(c_vect) [c_vect,c_names,c_classes]=class2num(c_vect); if length(c_classes)1), c_colors = c_vect; c_names = 1:size(c_vect,1); c_vect = size(c_vect,1); c_classes = zeros(prod(msize),1); elseif length(c_vect)==prod(msize), c_classes = c_vect; u = unique(c_classes(isfinite(c_classes) & c_classes>0)); c_names = u; c_vect = length(u); elseif length(c_vect)>1, c_names = c_vect; c_vect = length(c_vect); c_classes = zeros(prod(msize),1); elseif length(c_vect)==1, c_names = 1:c_vect; c_classes = zeros(prod(msize),1); end end udata.lattice=lattice; udata.patch_h=patch_h; udata.plane_h=plane_h; udata.type=get(udata.patch_h,'Tag'); udata.msize=msize; set(patch_h,'UserData',udata); if strcmp(udata.type,'planePlot') set([gca gcf],'UserData',udata); end str=cat(2,'som_select([],[],''click'')'); set(patch_h,'ButtonDownFcn',str); draw_colorselection(c_names,c_colors); tmp_data=findobj(get(0,'Children'),'Tag','SELECT_GUI'); tmp_data=get(tmp_data,'UserData'); tmp_data.c_names=c_names; tmp_data.mat=reshape(c_classes,msize); tmp_data.patch_h=patch_h; tmp_data.plane_h=plane_h; tmp_data.type=get(udata.patch_h,'Tag'); tmp_data.lattice=lattice; tmp_data.coords=[]; tmp_data.poly_h=[]; tmp_data.msize=msize; tmp_data.mode='select'; set(tmp_data.fig_h,'UserData',tmp_data); draw_classes; case 'click' switch get(gcf,'SelectionType') case 'open' return; case {'normal','alt'} draw_poly; case 'extend' click; end case 'choose' draw_colorselection(0,0,'choose'); case 'close' close_gui; case 'clear' clear_plane; case 'rb' rb_control; case 'ret_mat' gui=findobj(get(0,'Children'),'Tag','SELECT_GUI'); gui=get(gui,'UserData'); mat=reshape(gui.mat,prod(size(gui.mat)),1); if ~isempty(gui.c_names) if isnumeric(gui.c_names), tmp=zeros(length(mat),1); else tmp=cell(length(mat),1); end for i=1:length(gui.c_names) inds=find(mat==i); tmp(inds)=gui.c_names(i); end mat=tmp; end varargout{1}=mat; %gui.mat=zeros(size(gui.mat)); %set(gui.fig_h,'UserData',gui); %h=findobj(get(gui.plane_h,'Children'),'Tag','SEL_PATCH'); %delete(h); end return; %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %% subfunctions function rb_control; h=findobj(get(gcf,'Children'),'Style','radiobutton'); set(h,'Value',0); set(gcbo,'Value',1); udata=get(gcf,'UserData'); if strcmp(get(gcbo,'Tag'),'Radiobutton1') udata.mode='select'; else udata.mode='clear'; end set(gcf,'UserData',udata); %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function clear_plane h=findobj(get(0,'Children'),'Tag','SELECT_GUI'); gui=get(h,'UserData'); if strcmp(get(gui.patch_h,'Tag'),'planePlot') colors=reshape(get(gui.patch_h,'FaceVertexCData'),[prod(gui.msize) 3]); colors(:,:)=NaN; set(gui.patch_h,'FaceVertexCData',colors); end h=findobj(get(gui.plane_h,'Children'),'Tag','SEL_PATCH'); gui.mat=zeros(gui.msize); set(gui.fig_h,'UserData',gui); delete(h); %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function click udata=get(gcbo,'UserData'); udata=get(udata.patch_h,'UserData'); coords=get(gca,'CurrentPoint'); row=round(coords(1,2)); if row > udata.msize(1), row = udata.msize(1); end if row < 1, row = 1; end if any(strcmp(udata.lattice,{'hexa','hexaU'})) & ~mod(row,2), col=floor(coords(1,1))+0.5; if col > udata.msize(2)+0.5, col=udata.msize(2)+0.5; end else col=round(coords(1,1)); if col > udata.msize(2), col=udata.msize(2); end end if col < 1, col = 1; end if strcmp(udata.type,'planePlot') if ~mod(row,2) & strcmp(udata.lattice,'hexa'), col=round(col-0.5); end ind=sub2ind(udata.msize,row,col); colors=reshape(get(udata.patch_h,'FaceVertexCData'),[prod(udata.msize) 3]); gui=findobj(get(0,'Children'),'Tag','SELECT_GUI'); gui=get(gui,'UserData'); if ~isempty(gui.curr_col) & all(~isnan(colors(ind,1,:))), if ~strcmp(gui.mode,'clear') & ~all(gui.curr_col == colors(ind,:)) colors(ind,:)=gui.curr_col; gui.mat(row,col)=gui.class; else colors(ind,:)=[NaN NaN NaN]; gui.mat(row,col)=0; end elseif strcmp(gui.mode,'clear') colors(ind,:)=[NaN NaN NaN]; gui.mat(row,col)=0; elseif isempty(gui.curr_col) return; else gui.mat(row,col)=gui.class; colors(ind,:)=gui.curr_col; end set(udata.patch_h,'FaceVertexCData',colors); set(gui.fig_h,'UserData',gui); return; end if any(strcmp(udata.type,{'planePie','planeBar'})) [x,y]=pol2cart(0:0.1:2*pi,0.5); coords=[x';0.5]*0.7; coords(:,2)=[y';0]*0.7; elseif strcmp(udata.lattice,'hexa'); coords=0.7*vis_patch('hexa'); else coords=0.7*vis_patch('rect'); end coords(:,1)=coords(:,1)+col; coords(:,2)=coords(:,2)+row; if ~mod(row,2) & strcmp(udata.lattice,'hexa'), col=round(col-0.5); end hold on; if gco == udata.patch_h gui=findobj(get(0,'Children'),'Tag','SELECT_GUI'); gui=get(gui,'UserData'); if isnan(gui.curr_col) | strcmp(gui.mode,'clear'), return; end h=fill(coords(:,1),coords(:,2),gui.curr_col); str=cat(2,'som_select([],[],''click'')'); set(h,'ButtonDownFcn',str,'Tag','SEL_PATCH'); tmp.patch_h=udata.patch_h; set(h,'UserData',tmp); gui.mat(row,col)=gui.class; set(gui.fig_h,'UserData',gui); else gui=findobj(get(0,'Children'),'Tag','SELECT_GUI'); gui=get(gui,'UserData'); if ~all(get(gcbo,'FaceColor') == gui.curr_col) & ~strcmp(gui.mode,'clear'), if ~isnan(gui.curr_col), set(gcbo,'FaceColor',gui.curr_col); gui.mat(row,col) = gui.class; end else gui.mat(row,col)=0; delete(gco); end set(gui.fig_h,'UserData',gui); end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function draw_colorselection(varargin) if length(varargin)==2, if length(varargin{1})==1, n = varargin{1}; names = 1:n; else n = length(varargin{1}); names = varargin{1}; end colors = varargin{2}; shape=[0.5 -0.5;0.5 0.5;1.5 0.5;1.5 -0.5]; rep_x=repmat(shape(:,1),1,n); rep_y=repmat(shape(:,2),1,n); for i=0:getfield(size(rep_y,2))-1, rep_x(:,i+1)=rep_x(:,i+1)+i; end if isempty(colors), colors=jet(n); end data=som_select_gui; data.colors=colors; data.curr_col=NaN; data.class=0; set(0,'CurrentFigure',data.fig_h); hold on; tmp=fill(rep_x,rep_y,0.8); for i=1:n set(tmp(i),... 'EdgeColor',[0 0 0],... 'FaceColor',colors(i,:),... 'ButtonDownFcn','som_select([],0,''choose'');'); end axis('equal'); axis('on'); set(gca,'XTick',1:n,'XTickLabel',names,'XAxisLocation','top'); set(data.a_h,'YLim',[-0.5,0.5],... 'XLim',[0.5 n+0.5],... 'YTickLabel',''); set(data.fig_h,'UserData',data); elseif strcmp(varargin{3},'choose') udata=get(gcf,'UserData'); if strcmp(get(gcbo,'Selected'),'off') old=findobj(get(gca,'Children'),'Type','patch'); set(old,'Selected','off'); set(gcbo,'Selected','on'); udata.curr_col=udata.colors(round(mean(get(gcbo,'XData'))),:); udata.class=mean(get(gcbo,'XData')); else set(gcbo,'Selected','off'); udata.curr_col=NaN; udata.class=0; end set(gcf,'UserData',udata); end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function data=som_select_gui() a = figure('Color',[0.8 0.8 0.8], ... 'PaperType','a4letter', ... 'Position',[586 584 560 210], ... 'Tag','SELECT_GUI'); data.fig_h=a; b = axes('Parent',a, ... 'Box','on', ... 'CameraUpVector',[0 1 0], ... 'Color',[1 1 1], ... 'DataAspectRatioMode','manual', ... 'PlotBoxAspectRatio',[20 1 2], ... 'PlotBoxAspectRatioMode','manual', ... 'Position',[0.13 0.11 0.775 0.815], ... 'Tag','Axes1', ... 'WarpToFill','off', ... 'XColor',[0 0 0], ... 'XLimMode','manual', ... 'YColor',[0 0 0], ... 'YLimMode','manual', ... 'YTickLabelMode','manual', ... 'ZColor',[0 0 0]); data.a_h=b; b = uicontrol('Parent',a, ... 'Units','points', ... 'BackgroundColor',[0.701961 0.701961 0.701961], ... 'Callback','som_select([],[],''close'')', ... 'FontWeight','demi', ... 'Position',[150 12 50 20], ... 'String','CLOSE', ... 'Tag','Pushbutton1'); b = uicontrol('Parent',a, ... 'Units','points', ... 'BackgroundColor',[0.701961 0.701961 0.701961], ... 'Callback','som_select([],0,''ret_mat'')',... 'FontWeight','demi', ... 'Position',[365 12 50 20], ... 'String','OK', ... 'Tag','Pushbutton2'); b = uicontrol('Parent',a, ... 'Units','points', ... 'BackgroundColor',[0.701961 0.701961 0.701961], ... 'Callback','som_select([],0,''clear'')',... 'FontWeight','demi', ... 'Position',[257.5 12 50 20], ... 'String','CLEAR', ... 'Tag','Pushbutton3'); b = uicontrol('Parent',a, ... 'Units','points', ... 'Position',[50 27 17 16], ... 'Callback','som_select([],[],''rb'')',... 'Style','radiobutton', ... 'Tag','Radiobutton1', ... 'Value',1); b = uicontrol('Parent',a, ... 'Units','points', ... 'BackgroundColor',[0.701961 0.701961 0.701961], ... 'Callback','som_select([],[],''rb'')',... 'Position',[50 7 17 16], ... 'Style','radiobutton', ... 'Tag','Radiobutton2'); b = uicontrol('Parent',a, ... 'Units','points', ... 'BackgroundColor',[0.8 0.8 0.8], ... 'FontSize',9, ... 'FontWeight','demi', ... 'HorizontalAlignment','left', ... 'Position',[72 25 28 15], ... 'String','Select', ... 'Style','text', ... 'Tag','StaticText1'); b = uicontrol('Parent',a, ... 'Units','points', ... 'BackgroundColor',[0.8 0.8 0.8], ... 'FontSize',9, ... 'FontWeight','demi', ... 'HorizontalAlignment','left', ... 'Position',[72 7 25 13.6], ... 'String','Clear', ... 'Style','text', ... 'Tag','StaticText2'); %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function close_gui udata=get(get(gcbo,'Parent'),'UserData'); if strcmp(udata.type,'planePlot'); set(udata.plane_h,'ButtonDownFcn','','UserData',[]); set(get(udata.plane_h,'Parent'),'ButtonDownFcn',''); delete(udata.patch_h); return; end h=findobj(get(udata.plane_h,'Children'),'Tag','SEL_PATCH'); set(udata.patch_h,'ButtonDownFcn','','UserData',[]); delete(h); close(udata.fig_h); %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function draw_poly udata=get(findobj(get(0,'Children'),'Tag','SELECT_GUI'),'UserData'); if isempty(udata.coords) & strcmp(get(gcf,'SelectionType'),'alt') return; end coords(1,1) = getfield(get(gca,'CurrentPoint'),{3}); coords(1,2) = getfield(get(gca,'CurrentPoint'),{1}); udata.coords = cat(1,udata.coords,coords); delete(udata.poly_h); subplot(udata.plane_h); hold on; switch get(gcf,'SelectionType'); case 'normal' udata.poly_h=plot(udata.coords(:,2),udata.coords(:,1),'black',... 'ButtonDownFcn','som_select([],[],''click'')',... 'LineWidth',2); set(udata.fig_h,'UserData',udata); case 'alt' udata.coords=cat(1,udata.coords,udata.coords(1,:)); udata.poly_h=plot(udata.coords(:,2),udata.coords(:,1),'black',... 'LineWidth',2); delete(udata.poly_h); if ~isnan(udata.curr_col) tmp=sort(repmat((1:udata.msize(1))',udata.msize(2),1)); tmp(:,2)=repmat((1:udata.msize(2))',udata.msize(1),1); tmp2=tmp; if strcmp(udata.type,'planePlot') in=find(inpolygon(tmp(:,2),tmp(:,1),... udata.coords(:,2),udata.coords(:,1))); row=tmp2(in,1); col=tmp2(in,2); in=sub2ind(udata.msize,row,col); colors=reshape(get(udata.patch_h,'FaceVertexCData'),... [prod(udata.msize) 3]); if ~isnan(udata.curr_col) & ~strcmp(udata.mode,'clear') colors(in,:)=ones(length(in),1)*udata.curr_col; udata.mat(row,col)=udata.class; elseif strcmp(udata.mode,'clear') colors(in,:)=[NaN NaN NaN]; udata.mat(row,col)=0; end udata.poly_h=[]; udata.coords=[]; set(udata.patch_h,'FaceVertexCData',colors); set(udata.fig_h,'UserData',udata); return; end if strcmp(udata.lattice,'hexa'); t=find(~rem(tmp(:,1),2)); tmp(t,2)=tmp(t,2)+0.5; if any(strcmp(get(udata.patch_h,'Tag'),{'planeC','planeU'})) p=0.7*vis_patch('hexa'); else [x,y]=pol2cart(0:0.1:2*pi,0.5); p=[x';0.5]*0.7; p(:,2)=[y';0]*0.7; end else if any(strcmp(get(udata.patch_h,'Tag'),{'planeC','planeU'})) p=0.7*vis_patch('rect'); else [x,y]=pol2cart(0:0.1:2*pi,0.5); p=[x';0.5]*0.7; p(:,2)=[y';0]*0.7; end end in=find(inpolygon(tmp(:,2),tmp(:,1),udata.coords(:,2),udata.coords(:,1))); set(udata.fig_h,'UserData',udata); if strcmp(udata.mode,'select') remove_selpatches; udata=get(udata.fig_h,'UserData'); for i=1:length(in) udat.patch_h=udata.patch_h; h=patch(p(:,1)+tmp(in(i),2),p(:,2)+tmp(in(i),1),... udata.curr_col,... 'EdgeColor','black',... 'ButtonDownFcn','som_select([],[],''click'')', ... 'Tag','SEL_PATCH',... 'UserData',udat); udata.mat(tmp2(in(i),1),tmp2(in(i),2))=udata.class; end else remove_selpatches; udata=get(udata.fig_h,'UserData'); %h=findobj(get(udata.plane_h,'Children'),'Tag','SEL_PATCH'); %for i=1:length(h) % if all(get(h(i),'FaceColor')==udata.curr_col) & ... % inpolygon(mean(get(h(i),'XData')),mean(get(h(i),'YData')),... % udata.coords(:,2),udata.coords(:,1)) % coords=[floor(mean(get(h(i),'YData')))... % floor(mean(get(h(i),'XData')))]; % udata.mat(coords(1),coords(2))=0; % delete(h(i)); % end %end end end udata.poly_h=[]; udata.coords=[]; set(udata.fig_h,'UserData',udata); end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function remove_selpatches udata=get(findobj(get(0,'Children'),'Tag','SELECT_GUI'),'UserData'); h=findobj(get(udata.plane_h,'Children'),'Tag','SEL_PATCH'); for i=1:length(h) if inpolygon(mean(get(h(i),'XData')),mean(get(h(i),'YData')),... udata.coords(:,2),udata.coords(:,1)); coords=[floor(mean(get(h(i),'YData')))... floor(mean(get(h(i),'XData')))]; udata.mat(coords(1),coords(2))=0; delete(h(i)); end end set(udata.fig_h,'UserData',udata); %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function [n,names,classes]=class2num(class) names = {}; classes = zeros(length(class),1); for i=1:length(class) if ~isempty(class{i}), a = find(strcmp(class{i},names)); if isempty(a), names=cat(1,names,class(i)); classes(i) = length(names); else classes(i) = a; end end end n=length(names); %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function h=find_patch(a_h) h=[]; tags={'planeC','planeU','planePie','planeBar','planePlot'}; for i=1:5 if ~isempty(findobj(get(a_h,'Children'),'Tag',tags{i})) h=findobj(get(gca,'Children'),'Tag',tags{i}); if length(h) > 1 h=h(1); end return; end end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% function draw_classes udata=get(findobj(get(0,'Children'),'Tag','SELECT_GUI'), ... 'UserData'); figure(get(udata.plane_h,'Parent')) subplot(udata.plane_h); colors=zeros(prod(udata.msize),3)+NaN; c_map=jet(length(udata.c_names)); inds = find(udata.mat); for i=1:length(inds), colors(inds(i),:) = c_map(udata.mat(inds(i)),:); end if strcmp(udata.type,'planePlot'), set(udata.patch_h,'FaceVertexCData',colors); set(udata.fig_h,'UserData',udata); else hold on co = som_vis_coords(udata.lattice,udata.msize); if any(strcmp(get(udata.patch_h,'Tag'),{'planeC','planeU'})) p=0.7*vis_patch(udata.lattice); else [x,y]=pol2cart(0:0.1:2*pi,0.5); p=[x';0.5]*0.7; p(:,2)=[y';0]*0.7; end for i=1:length(inds), udat.patch_h=udata.patch_h; h=patch(p(:,1)+co(inds(i),1),p(:,2)+co(inds(i),2),... colors(inds(i),:),... 'EdgeColor','black',... 'ButtonDownFcn','som_select([],[],''click'')', ... 'Tag','SEL_PATCH',... 'UserData',udat); end end %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%