%% subject loop function decode = xsvm_subject_loop(header,subjectdata,svmopts) addpath 'libsvm-mat-2.88-1'; nSubjects = numel(subjectdata); RANDOMIZE_DATAPOINTS = 0; decode = struct; decode.decodePerformance = []; decode.rawTimeCourse = []; disp(sprintf('computinig additional datastructs for %u subjects',nSubjects)); timeline = header.timeline; timeline.frameShiftStart = header.frameShift.frameShiftStart; timeline.frameShiftEnd = header.frameShift.frameShiftEnd; timeline.decodeDuration = header.frameShift.decodeDuration; % TimePointMatrix for subjectDataID = 1:nSubjects currentSubject = subjectdata{subjectDataID}; timePointArgs.pst = currentSubject.pst; timePointArgs.labelMap = LabelMap(header.classDef.labelCells,header.classDef.conditionCells); timePointArgs.eventList = header.classDef.eventMatrix; timePointMatrix{subjectDataID} = buildTimePointMatrix(timeline,timePointArgs); decode.rawTimeCourse = [decode.rawTimeCourse currentSubject.pst]; end % timeframe x-subject validation timeLineStart = timeline.frameShiftStart; timeLineEnd = timeline.frameShiftEnd; display(sprintf('%u -fold cross validation for %u timeslices.\n',nSubjects,size(1:timeLineEnd-timeLineStart+1,2))); % disp(sprintf('Press ANY-Key to continue.\n Use Retrun if your Keyboard lacks the ANY-Key.')); % pause for timeIndex = 1:timeLineEnd-timeLineStart+1 cross_value = []; for validationSubjectID = 1:nSubjects svm_train_label = []; svm_train_data = []; svm_validation_label = []; svm_validation_data = []; for subjectDataID = 1:nSubjects svmstruct = calculateSVMTables(timePointMatrix{subjectDataID},timeIndex); if subjectDataID == validationSubjectID svm_validation_label = svmstruct.svmlabel; svm_validation_data = svmstruct.svmdata; else svm_train_label = [svm_train_label; svmstruct.svmlabel]; svm_train_data = [svm_train_data; svmstruct.svmdata]; end end if RANDOMIZE_DATAPOINTS rndindex = randperm(length(svm_train_label)); svm_train_data = svm_train_data(rndindex,:); svm_train_label = svm_train_label(rndindex); end svmmodel = svmtrain(svm_train_label,svm_train_data,svmopts); [plabel accuracy dvalue] = svmpredict(svm_validation_label,svm_validation_data,svmmodel,''); cross_value = [cross_value accuracy(1)]; end decode.decodePerformance = [decode.decodePerformance; cross_value]; end disp('decode done'); end