SVMCrossVal.git

@@ -42,8 +47,8 @@ for s = 1:nSubjects

     [extr x y z] = calculateRoiImageData(volumes,subjects{s}.roiFile);

     elapsed.calcExtr = toc;

-clear volumes; %save memory ??

-disp('cleared volumes');

+% clear volumes; %save memory ??

+% disp('cleared volumes');

 tic

     nVoxel = size(extr(1).dat,1);

@@ -102,16 +107,19 @@ tic

     labelMap = timePointArgs.labelMap;

     eventList = pstopts.eventList;

-    img3D = [];

     % tmp = spm_imatrix(V(kImage).mat); %

     % vdim = tmp(7:9); % Voxel-Size

     vdim = [3,3,3.5];

+    mask_image = load_nii(subjects{s}.roiFile.fname);

+    

     for timeShift = 1:timeLineEnd-timeLineStart+1

     % center timepoint && relative shift

     frameStart  = floor(-globalStart+1+timeShift - 0.5*decodeDuration);

     frameEnd    = min(ceil(frameStart+decodeDuration + 0.5*decodeDuration),-globalStart+globalEnd);

+        img3D = zeros(size(mask_image)); %output image

+

         for iVoxel = 1:nVoxel % linear structure avoids 3D-Loop.

             % get surrounding coordinate-IDs within radius

             sphere = fbs_buildSphere(mapping,iVoxel,radius,vdim);

@@ -141,12 +149,17 @@ tic

             % save the decode value to the corresponding coordinate

             coord= mapping.indexToCoordMap.get(iVoxel);

-            img3D(coord',timeShift) = decode;

+            x = coord(1);

+            y = coord(2);

+            z = coord(3);

+            img3D(x,y,z) = decode/100; %damn percentage

+%             mask_image.img(x,y,z) = decode/100;

         end  %for each voxel

-        nii = make_nii(img3D,vdim,[],16,'decode'); %default origin

+        nii = make_nii(img3D,vdim,mask_image.hdr.hist.originator(1:3),16,'decode performance'); %default origin

         save_nii(nii,sprintf('TESTFILE%g',timeShift));

+%         save_nii(mask_image,sprintf('MTESTFILE%g',timeShift));

     end %for each timeslice

     display('rastering done');